Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.18■■□□□ 1.3
VRK3Q8IV63 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.18■■□□□ 1.3
VRK3Q8IV63 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
VRK3Q8IV63 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VRK3Q8IV63 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VRK3Q8IV63 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VRK3Q8IV63 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
VRK3Q8IV63 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VRK3Q8IV63 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VRK3Q8IV63 HYI-210ENST00000486909 905 ntTSL 5 BASIC23.17■■□□□ 1.3
VRK3Q8IV63 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.17■■□□□ 1.3
VRK3Q8IV63 BHLHE23-202ENST00000612929 1109 ntBASIC23.17■■□□□ 1.3
VRK3Q8IV63 PVT1_1.1-201ENST00000615125 194 ntBASIC23.17■■□□□ 1.3
VRK3Q8IV63 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.17■■□□□ 1.3
VRK3Q8IV63 FOXO3B-201ENST00000395675 1928 ntBASIC23.17■■□□□ 1.3
VRK3Q8IV63 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
VRK3Q8IV63 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
VRK3Q8IV63 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
VRK3Q8IV63 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
VRK3Q8IV63 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
VRK3Q8IV63 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.16■■□□□ 1.3
VRK3Q8IV63 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.16■■□□□ 1.3
VRK3Q8IV63 AC010980.1-201ENST00000587192 1142 ntBASIC23.16■■□□□ 1.3
VRK3Q8IV63 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.16■■□□□ 1.3
VRK3Q8IV63 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.16■■□□□ 1.3
VRK3Q8IV63 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
VRK3Q8IV63 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
VRK3Q8IV63 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
VRK3Q8IV63 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.15■■□□□ 1.3
VRK3Q8IV63 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
VRK3Q8IV63 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
VRK3Q8IV63 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC23.15■■□□□ 1.3
VRK3Q8IV63 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
VRK3Q8IV63 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
VRK3Q8IV63 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
VRK3Q8IV63 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
VRK3Q8IV63 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.15■■□□□ 1.3
VRK3Q8IV63 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
VRK3Q8IV63 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
VRK3Q8IV63 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
VRK3Q8IV63 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
VRK3Q8IV63 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.14■■□□□ 1.29
VRK3Q8IV63 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
VRK3Q8IV63 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
VRK3Q8IV63 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
VRK3Q8IV63 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
VRK3Q8IV63 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
VRK3Q8IV63 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
VRK3Q8IV63 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
VRK3Q8IV63 AC138932.3-201ENST00000567634 1902 ntBASIC23.13■■□□□ 1.29
VRK3Q8IV63 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
VRK3Q8IV63 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
VRK3Q8IV63 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VRK3Q8IV63 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VRK3Q8IV63 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VRK3Q8IV63 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.12■■□□□ 1.29
VRK3Q8IV63 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.12■■□□□ 1.29
VRK3Q8IV63 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VRK3Q8IV63 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VRK3Q8IV63 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VRK3Q8IV63 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VRK3Q8IV63 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
VRK3Q8IV63 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
VRK3Q8IV63 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
VRK3Q8IV63 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VRK3Q8IV63 AC142381.3-201ENST00000568208 1670 ntBASIC23.1■■□□□ 1.29
VRK3Q8IV63 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.1■■□□□ 1.29
VRK3Q8IV63 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.1■■□□□ 1.29
VRK3Q8IV63 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VRK3Q8IV63 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VRK3Q8IV63 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VRK3Q8IV63 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
VRK3Q8IV63 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
VRK3Q8IV63 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.09■■□□□ 1.29
VRK3Q8IV63 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VRK3Q8IV63 IDNK-201ENST00000376417 511 ntTSL 5 BASIC23.09■■□□□ 1.29
VRK3Q8IV63 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VRK3Q8IV63 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VRK3Q8IV63 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VRK3Q8IV63 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VRK3Q8IV63 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
VRK3Q8IV63 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
VRK3Q8IV63 MTX2-204ENST00000443241 799 ntTSL 3 BASIC23.08■■□□□ 1.29
VRK3Q8IV63 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
VRK3Q8IV63 AC019171.1-201ENST00000601251 1056 ntBASIC23.08■■□□□ 1.29
VRK3Q8IV63 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.08■■□□□ 1.29
VRK3Q8IV63 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
VRK3Q8IV63 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
VRK3Q8IV63 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.08■■□□□ 1.28
VRK3Q8IV63 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
VRK3Q8IV63 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
VRK3Q8IV63 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VRK3Q8IV63 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
VRK3Q8IV63 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.07■■□□□ 1.28
VRK3Q8IV63 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.07■■□□□ 1.28
VRK3Q8IV63 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VRK3Q8IV63 AC074183.2-201ENST00000623112 922 ntBASIC23.07■■□□□ 1.28
VRK3Q8IV63 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
VRK3Q8IV63 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VRK3Q8IV63 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms