Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
COL18A1P39060 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC32.06■■■□□ 2.72
COL18A1P39060 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
COL18A1P39060 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL18A1P39060 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC32.05■■■□□ 2.72
COL18A1P39060 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC32.05■■■□□ 2.72
COL18A1P39060 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
COL18A1P39060 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC32.05■■■□□ 2.72
COL18A1P39060 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL18A1P39060 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
COL18A1P39060 AC010997.5-201ENST00000609182 354 ntBASIC32.04■■■□□ 2.72
COL18A1P39060 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC32.04■■■□□ 2.72
COL18A1P39060 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC32.04■■■□□ 2.72
COL18A1P39060 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC32.03■■■□□ 2.72
COL18A1P39060 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
COL18A1P39060 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC32.03■■■□□ 2.72
COL18A1P39060 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC32.03■■■□□ 2.72
COL18A1P39060 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC32.03■■■□□ 2.72
COL18A1P39060 MTDHP2-201ENST00000601468 714 ntBASIC32.03■■■□□ 2.72
COL18A1P39060 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC32.03■■■□□ 2.72
COL18A1P39060 RASSF1-AS1-201ENST00000629828 790 ntBASIC32.03■■■□□ 2.72
COL18A1P39060 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
COL18A1P39060 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL18A1P39060 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
COL18A1P39060 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
COL18A1P39060 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL18A1P39060 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
COL18A1P39060 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC32.02■■■□□ 2.72
COL18A1P39060 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC32.01■■■□□ 2.71
COL18A1P39060 EXOG-217ENST00000630638 197 ntTSL 5 BASIC32.01■■■□□ 2.71
COL18A1P39060 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC32.01■■■□□ 2.71
COL18A1P39060 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
COL18A1P39060 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC32■■■□□ 2.71
COL18A1P39060 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC31.99■■■□□ 2.71
COL18A1P39060 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
COL18A1P39060 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL18A1P39060 AF131216.4-201ENST00000638924 1588 ntBASIC31.98■■■□□ 2.71
COL18A1P39060 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
COL18A1P39060 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC31.98■■■□□ 2.71
COL18A1P39060 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL18A1P39060 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL18A1P39060 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
COL18A1P39060 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL18A1P39060 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC31.96■■■□□ 2.71
COL18A1P39060 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC31.96■■■□□ 2.71
COL18A1P39060 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC31.96■■■□□ 2.71
COL18A1P39060 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC31.96■■■□□ 2.71
COL18A1P39060 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC31.96■■■□□ 2.71
COL18A1P39060 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
COL18A1P39060 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
COL18A1P39060 AC096631.2-201ENST00000436136 790 ntBASIC31.94■■■□□ 2.7
COL18A1P39060 GAK-223ENST00000628912 497 ntTSL 5 BASIC31.94■■■□□ 2.7
COL18A1P39060 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.94■■■□□ 2.7
COL18A1P39060 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
COL18A1P39060 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
COL18A1P39060 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
COL18A1P39060 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
COL18A1P39060 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC31.93■■■□□ 2.7
COL18A1P39060 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
COL18A1P39060 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
COL18A1P39060 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC31.92■■■□□ 2.7
COL18A1P39060 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL18A1P39060 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.91■■■□□ 2.7
COL18A1P39060 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL18A1P39060 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL18A1P39060 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL18A1P39060 AP004609.3-201ENST00000610705 1884 ntBASIC31.91■■■□□ 2.7
COL18A1P39060 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL18A1P39060 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC31.91■■■□□ 2.7
COL18A1P39060 TK2-202ENST00000417693 1046 ntTSL 2 BASIC31.91■■■□□ 2.7
COL18A1P39060 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL18A1P39060 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC31.9■■■□□ 2.7
COL18A1P39060 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
COL18A1P39060 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
COL18A1P39060 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
COL18A1P39060 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
COL18A1P39060 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL18A1P39060 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
COL18A1P39060 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
COL18A1P39060 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL18A1P39060 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC31.87■■■□□ 2.69
COL18A1P39060 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC31.87■■■□□ 2.69
COL18A1P39060 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC31.86■■■□□ 2.69
COL18A1P39060 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
COL18A1P39060 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
COL18A1P39060 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL18A1P39060 CD72-202ENST00000378430 585 ntTSL 3 BASIC31.85■■■□□ 2.69
COL18A1P39060 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC31.85■■■□□ 2.69
COL18A1P39060 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC31.85■■■□□ 2.69
COL18A1P39060 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC31.85■■■□□ 2.69
COL18A1P39060 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.85■■■□□ 2.69
COL18A1P39060 AC139426.1-201ENST00000568218 2529 ntBASIC31.85■■■□□ 2.69
COL18A1P39060 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC31.84■■■□□ 2.69
COL18A1P39060 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL18A1P39060 AL356740.2-201ENST00000601559 647 ntBASIC31.84■■■□□ 2.69
COL18A1P39060 SNAI3-AS1-204ENST00000567997 2048 ntBASIC31.84■■■□□ 2.69
COL18A1P39060 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
COL18A1P39060 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
COL18A1P39060 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
COL18A1P39060 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC31.83■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms