Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1BO60663 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1BO60663 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.92■□□□□ 0.94
LMX1BO60663 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1BO60663 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.92■□□□□ 0.94
LMX1BO60663 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1BO60663 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LMX1BO60663 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LMX1BO60663 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.91■□□□□ 0.94
LMX1BO60663 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LMX1BO60663 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.91■□□□□ 0.94
LMX1BO60663 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1BO60663 AC142381.3-201ENST00000568208 1670 ntBASIC20.9■□□□□ 0.94
LMX1BO60663 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.9■□□□□ 0.94
LMX1BO60663 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1BO60663 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1BO60663 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1BO60663 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.9■□□□□ 0.94
LMX1BO60663 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.9■□□□□ 0.94
LMX1BO60663 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.9■□□□□ 0.94
LMX1BO60663 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1BO60663 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LMX1BO60663 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
LMX1BO60663 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LMX1BO60663 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LMX1BO60663 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LMX1BO60663 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LMX1BO60663 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LMX1BO60663 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.89■□□□□ 0.93
LMX1BO60663 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
LMX1BO60663 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.89■□□□□ 0.93
LMX1BO60663 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1BO60663 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.88■□□□□ 0.93
LMX1BO60663 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.88■□□□□ 0.93
LMX1BO60663 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1BO60663 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1BO60663 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.88■□□□□ 0.93
LMX1BO60663 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.88■□□□□ 0.93
LMX1BO60663 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1BO60663 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1BO60663 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1BO60663 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1BO60663 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1BO60663 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1BO60663 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.87■□□□□ 0.93
LMX1BO60663 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1BO60663 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1BO60663 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1BO60663 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1BO60663 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1BO60663 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
LMX1BO60663 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.86■□□□□ 0.93
LMX1BO60663 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.86■□□□□ 0.93
LMX1BO60663 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.86■□□□□ 0.93
LMX1BO60663 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1BO60663 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1BO60663 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1BO60663 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LMX1BO60663 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1BO60663 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1BO60663 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1BO60663 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1BO60663 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1BO60663 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.85■□□□□ 0.93
LMX1BO60663 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1BO60663 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1BO60663 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1BO60663 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1BO60663 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1BO60663 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1BO60663 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.84■□□□□ 0.93
LMX1BO60663 RARRES2P1-201ENST00000474487 481 ntBASIC20.84■□□□□ 0.93
LMX1BO60663 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.84■□□□□ 0.93
LMX1BO60663 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1BO60663 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.83■□□□□ 0.93
LMX1BO60663 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1BO60663 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.83■□□□□ 0.93
LMX1BO60663 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1BO60663 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.83■□□□□ 0.93
LMX1BO60663 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LMX1BO60663 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1BO60663 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1BO60663 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1BO60663 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1BO60663 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
LMX1BO60663 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LMX1BO60663 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.81■□□□□ 0.92
LMX1BO60663 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LMX1BO60663 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
LMX1BO60663 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LMX1BO60663 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.81■□□□□ 0.92
LMX1BO60663 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LMX1BO60663 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.81■□□□□ 0.92
LMX1BO60663 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1BO60663 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.8■□□□□ 0.92
LMX1BO60663 AL139125.2-201ENST00000623134 1869 ntBASIC20.8■□□□□ 0.92
LMX1BO60663 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1BO60663 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1BO60663 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1BO60663 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms