Protein–RNA interactions for Protein: O60341

KDM1A, Lysine-specific histone demethylase 1A, humanhuman

Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1AO60341 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
KDM1AO60341 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.34■■□□□ 1.33
KDM1AO60341 AC004987.1-201ENST00000428627 508 ntBASIC23.34■■□□□ 1.33
KDM1AO60341 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
KDM1AO60341 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
KDM1AO60341 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
KDM1AO60341 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
KDM1AO60341 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
KDM1AO60341 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
KDM1AO60341 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC23.33■■□□□ 1.33
KDM1AO60341 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.33■■□□□ 1.32
KDM1AO60341 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.32■■□□□ 1.32
KDM1AO60341 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
KDM1AO60341 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
KDM1AO60341 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC23.32■■□□□ 1.32
KDM1AO60341 AC092803.2-201ENST00000564287 1899 ntBASIC23.32■■□□□ 1.32
KDM1AO60341 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
KDM1AO60341 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.31■■□□□ 1.32
KDM1AO60341 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.31■■□□□ 1.32
KDM1AO60341 SPCS2P3-201ENST00000500401 656 ntBASIC23.31■■□□□ 1.32
KDM1AO60341 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
KDM1AO60341 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
KDM1AO60341 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
KDM1AO60341 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
KDM1AO60341 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.3■■□□□ 1.32
KDM1AO60341 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
KDM1AO60341 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
KDM1AO60341 AC139795.1-202ENST00000500444 432 ntBASIC23.3■■□□□ 1.32
KDM1AO60341 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.3■■□□□ 1.32
KDM1AO60341 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
KDM1AO60341 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
KDM1AO60341 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
KDM1AO60341 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
KDM1AO60341 AC074183.2-201ENST00000623112 922 ntBASIC23.29■■□□□ 1.32
KDM1AO60341 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
KDM1AO60341 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KDM1AO60341 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
KDM1AO60341 DUX4L18-201ENST00000553347 1267 ntBASIC23.28■■□□□ 1.32
KDM1AO60341 AL033527.3-201ENST00000566366 1196 ntBASIC23.28■■□□□ 1.32
KDM1AO60341 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.28■■□□□ 1.32
KDM1AO60341 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.28■■□□□ 1.32
KDM1AO60341 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KDM1AO60341 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
KDM1AO60341 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.27■■□□□ 1.32
KDM1AO60341 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
KDM1AO60341 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23.27■■□□□ 1.32
KDM1AO60341 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.27■■□□□ 1.32
KDM1AO60341 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC23.27■■□□□ 1.32
KDM1AO60341 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 BHLHE23-202ENST00000612929 1109 ntBASIC23.27■■□□□ 1.32
KDM1AO60341 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.27■■□□□ 1.32
KDM1AO60341 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
KDM1AO60341 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.26■■□□□ 1.31
KDM1AO60341 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KDM1AO60341 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
KDM1AO60341 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KDM1AO60341 AC010501.1-201ENST00000606270 1962 ntBASIC23.25■■□□□ 1.31
KDM1AO60341 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.25■■□□□ 1.31
KDM1AO60341 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KDM1AO60341 RPS2P7-201ENST00000447334 885 ntBASIC23.25■■□□□ 1.31
KDM1AO60341 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KDM1AO60341 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.25■■□□□ 1.31
KDM1AO60341 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.25■■□□□ 1.31
KDM1AO60341 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
KDM1AO60341 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.25■■□□□ 1.31
KDM1AO60341 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.24■■□□□ 1.31
KDM1AO60341 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.24■■□□□ 1.31
KDM1AO60341 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.24■■□□□ 1.31
KDM1AO60341 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
KDM1AO60341 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.24■■□□□ 1.31
KDM1AO60341 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
KDM1AO60341 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
KDM1AO60341 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
KDM1AO60341 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.23■■□□□ 1.31
KDM1AO60341 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
KDM1AO60341 AC087393.1-201ENST00000582896 145 ntBASIC23.23■■□□□ 1.31
KDM1AO60341 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.23■■□□□ 1.31
KDM1AO60341 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
KDM1AO60341 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
KDM1AO60341 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
KDM1AO60341 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
KDM1AO60341 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
KDM1AO60341 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
KDM1AO60341 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.22■■□□□ 1.31
KDM1AO60341 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC23.22■■□□□ 1.31
KDM1AO60341 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
KDM1AO60341 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
KDM1AO60341 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.21■■□□□ 1.31
KDM1AO60341 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.21■■□□□ 1.31
KDM1AO60341 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
KDM1AO60341 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.21■■□□□ 1.31
KDM1AO60341 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms