RNA–Protein interactions for RNA: ENST00000451876.5

CPSF4-207, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5 BASIC

Gene CPSF4, Length 1,644 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-207ENST00000451876 NISCHQ9Y2I1 1504 aa57.58■■■■■ 6.81
CPSF4-207ENST00000451876 CCDC180Q9P1Z9 1646 aa50.97■■■■■ 5.75
CPSF4-207ENST00000451876 ABCC9O60706 1549 aa49.29■■■■■ 5.48
CPSF4-207ENST00000451876 ZCCHC6Q5VYS8 1495 aaKnown RBP48.11■■■■■ 5.29
CPSF4-207ENST00000451876 DCAF8L2P0C7V8 631 aa47.8■■■■■ 5.24
CPSF4-207ENST00000451876 NACADO15069 1562 aa47.7■■■■■ 5.23
CPSF4-207ENST00000451876 RB1CC1Q8TDY2 1594 aa47.64■■■■■ 5.22
CPSF4-207ENST00000451876 DCAF1Q9Y4B6 1507 aa47.62■■■■■ 5.21
CPSF4-207ENST00000451876 MYO15BQ96JP2 1530 aa47.59■■■■■ 5.21
CPSF4-207ENST00000451876 UNC13AQ9UPW8 1703 aa46.75■■■■■ 5.07
CPSF4-207ENST00000451876 SCRIBQ14160 1630 aa46.6■■■■■ 5.05
CPSF4-207ENST00000451876 BICRAQ9NZM4 1560 aa46.26■■■■■ 5
CPSF4-207ENST00000451876 PABPN1Q86U42 306 aaKnown RBP eCLIP46.12■■■■■ 4.97
CPSF4-207ENST00000451876 SHROOM4Q9ULL8 1493 aa45.88■■■■■ 4.94
CPSF4-207ENST00000451876 EIF4G1Q04637 1599 aaKnown RBP44.96■■■■■ 4.79
CPSF4-207ENST00000451876 CECR2Q9BXF3 1484 aa44.83■■■■■ 4.77
CPSF4-207ENST00000451876 DNAJC5BQ9UF47 199 aa44.68■■■■■ 4.74
CPSF4-207ENST00000451876 CC2D2AQ9P2K1 1620 aa44.64■■■■■ 4.74
CPSF4-207ENST00000451876 SMARCA4P51532 1647 aa44.6■■■■■ 4.73
CPSF4-207ENST00000451876 BAZ1AQ9NRL2 1556 aaPredicted RBP44.58■■■■■ 4.73
CPSF4-207ENST00000451876 MROH2BQ7Z745 1585 aa44.43■■■■■ 4.7
CPSF4-207ENST00000451876 ATAD2BQ9ULI0 1458 aa44.15■■■■■ 4.66
CPSF4-207ENST00000451876 PEG3Q9GZU2 1588 aa44.12■■■■■ 4.65
CPSF4-207ENST00000451876 SMARCA2P51531 1590 aa44.11■■■■■ 4.65
CPSF4-207ENST00000451876 RSF1Q96T23 1441 aaPredicted RBP44.09■■■■■ 4.65
CPSF4-207ENST00000451876 WIZO95785 1651 aa44.03■■■■■ 4.64
CPSF4-207ENST00000451876 NCAPD3P42695 1498 aa44■■■■■ 4.63
CPSF4-207ENST00000451876 HMGXB3Q12766 1538 aa43.89■■■■■ 4.62
CPSF4-207ENST00000451876 BAZ1BQ9UIG0 1483 aaKnown RBP43.82■■■■■ 4.61
CPSF4-207ENST00000451876 TOP2AP11388 1531 aaKnown RBP43.52■■■■■ 4.56
CPSF4-207ENST00000451876 SUPT5HO00267 1087 aaKnown RBP43.4■■■■■ 4.54
CPSF4-207ENST00000451876 CCDC88BA6NC98 1476 aa42.99■■■■■ 4.47
CPSF4-207ENST00000451876 NESP48681 1621 aa42.86■■■■■ 4.45
CPSF4-207ENST00000451876 LAMC3Q9Y6N6 1575 aa42.79■■■■■ 4.44
CPSF4-207ENST00000451876 CADPSQ9ULU8 1353 aa42.74■■■■■ 4.43
CPSF4-207ENST00000451876 CFTRP13569 1480 aa42.65■■■■■ 4.42
CPSF4-207ENST00000451876 PRDM2Q13029 1718 aa42.5■■■■■ 4.39
CPSF4-207ENST00000451876 KIF21AQ7Z4S6 1674 aa42.43■■■■■ 4.38
CPSF4-207ENST00000451876 PDS5BQ9NTI5 1447 aa42.4■■■■■ 4.38
CPSF4-207ENST00000451876 ERCC6Q03468 1493 aa42.38■■■■■ 4.38
CPSF4-207ENST00000451876 FANCD2Q9BXW9 1451 aa42.29■■■■■ 4.36
CPSF4-207ENST00000451876 CEP164Q9UPV0 1460 aa42.19■■■■■ 4.34
CPSF4-207ENST00000451876 THOC2Q8NI27 1593 aaKnown RBP42.11■■■■■ 4.33
CPSF4-207ENST00000451876 MRC2Q9UBG0 1479 aa41.99■■■■■ 4.31
CPSF4-207ENST00000451876 WDR62O43379 1518 aa41.87■■■■■ 4.29
CPSF4-207ENST00000451876 URB2Q14146 1524 aaKnown RBP41.87■■■■■ 4.29
CPSF4-207ENST00000451876 DNMBPQ6XZF7 1577 aa41.71■■■■■ 4.27
CPSF4-207ENST00000451876 TOPBP1Q92547 1522 aa41.7■■■■■ 4.27
CPSF4-207ENST00000451876 ABCC8Q09428 1581 aa41.7■■■■■ 4.27
CPSF4-207ENST00000451876 CUX2O14529 1486 aa41.69■■■■■ 4.26
CPSF4-207ENST00000451876 CUX1P39880 1505 aa41.64■■■■■ 4.26
CPSF4-207ENST00000451876 WRNQ14191 1432 aaPredicted RBP eCLIP41.54■■■■■ 4.245e-6■■■■■ 29.2
CPSF4-207ENST00000451876 SYNJ1O43426 1573 aa41.5■■■■■ 4.23
CPSF4-207ENST00000451876 BIVM-ERCC5R4GMW8 1640 aa41.46■■■■■ 4.23
CPSF4-207ENST00000451876 TOP2BQ02880 1626 aa41.44■■■■■ 4.22
CPSF4-207ENST00000451876 POLA1P09884 1462 aaPredicted RBP41.4■■■■■ 4.22
CPSF4-207ENST00000451876 FGD5Q6ZNL6 1462 aa41.39■■■■■ 4.22
CPSF4-207ENST00000451876 TARBP1Q13395 1621 aaKnown RBP41.25■■■■■ 4.19
CPSF4-207ENST00000451876 IFT140Q96RY7 1462 aa41.24■■■■■ 4.19
CPSF4-207ENST00000451876 RAD54L2Q9Y4B4 1467 aa41.22■■■■■ 4.19
CPSF4-207ENST00000451876 SOGA1O94964 1423 aa41.17■■■■■ 4.18
CPSF4-207ENST00000451876 WDR97A6NE52 1622 aa41.11■■■■■ 4.17
CPSF4-207ENST00000451876 ZNF608Q9ULD9 1512 aaPredicted RBP41.08■■■■■ 4.17
CPSF4-207ENST00000451876 EIF4G3O43432 1585 aaKnown RBP40.99■■■■■ 4.15
CPSF4-207ENST00000451876 ABCA10Q8WWZ4 1543 aa40.99■■■■■ 4.15
CPSF4-207ENST00000451876 TRIM41Q8WV44 630 aa40.91■■■■■ 4.14
CPSF4-207ENST00000451876 AQRO60306 1485 aaKnown RBP eCLIP40.9■■■■■ 4.142e-7■■■■■ 78.1
CPSF4-207ENST00000451876 TDRD9Q8NDG6 1382 aaKnown RBP40.9■■■■■ 4.14
CPSF4-207ENST00000451876 ABCA5Q8WWZ7 1642 aa40.84■■■■■ 4.13
CPSF4-207ENST00000451876 CHIC1Q5VXU3 224 aa40.83■■■■■ 4.13
CPSF4-207ENST00000451876 GAPVD1Q14C86 1478 aa40.74■■■■■ 4.11
CPSF4-207ENST00000451876 PBRM1Q86U86 1689 aa40.73■■■■■ 4.11
CPSF4-207ENST00000451876 GRIN2BQ13224 1484 aa40.63■■■■■ 4.09
CPSF4-207ENST00000451876 KIF27Q86VH2 1401 aa40.58■■■■■ 4.09
CPSF4-207ENST00000451876 SNAPC4Q5SXM2 1469 aa40.54■■■■■ 4.08
CPSF4-207ENST00000451876 RUSC2Q8N2Y8 1516 aa40.52■■■■■ 4.08
CPSF4-207ENST00000451876 ERICH3Q5RHP9 1530 aa40.5■■■■■ 4.07
CPSF4-207ENST00000451876 MAGI1Q96QZ7 1491 aaPredicted RBP40.47■■■■■ 4.07
CPSF4-207ENST00000451876 ADAMTS12P58397 1594 aa40.4■■■■■ 4.06
CPSF4-207ENST00000451876 CHD1O14646 1710 aa40.4■■■■■ 4.06
CPSF4-207ENST00000451876 IGF1RP08069 1367 aa40.35■■■■■ 4.05
CPSF4-207ENST00000451876 SYNJ2O15056 1496 aa40.31■■■■■ 4.04
CPSF4-207ENST00000451876 CUL7Q14999 1698 aa40.29■■■■■ 4.04
CPSF4-207ENST00000451876 FHAD1B1AJZ9 1412 aa40.25■■■■■ 4.03
CPSF4-207ENST00000451876 FBLN2P98095 1184 aa40.24■■■■■ 4.03
CPSF4-207ENST00000451876 CHMP7Q8WUX9 453 aaPredicted RBP40.18■■■■■ 4.02
CPSF4-207ENST00000451876 EEA1Q15075 1411 aa40.18■■■■■ 4.02
CPSF4-207ENST00000451876 GRIN2AQ12879 1464 aa40.15■■■■■ 4.02
CPSF4-207ENST00000451876 CARMIL1Q5VZK9 1371 aa40.12■■■■■ 4.01
CPSF4-207ENST00000451876 FAM9AQ8IZU1 332 aaPredicted RBP40.11■■■■■ 4.01
CPSF4-207ENST00000451876 CSRNP3Q8WYN3 585 aa40.04■■■■■ 4
CPSF4-207ENST00000451876 OSCARQ8IYS5 282 aa40.02■■■■■ 4
CPSF4-207ENST00000451876 PRXQ9BXM0 1461 aa40■■■■□ 3.99
CPSF4-207ENST00000451876 CEP170Q5SW79 1584 aa39.98■■■■□ 3.99
CPSF4-207ENST00000451876 RAPGEF2Q9Y4G8 1499 aa39.97■■■■□ 3.99
CPSF4-207ENST00000451876 NUP160Q12769 1436 aa39.93■■■■□ 3.98
CPSF4-207ENST00000451876 CLASP1Q7Z460 1538 aa39.89■■■■□ 3.98
CPSF4-207ENST00000451876 KIF21BO75037 1637 aa39.82■■■■□ 3.97
CPSF4-207ENST00000451876 CTTNBP2Q8WZ74 1663 aa39.7■■■■□ 3.95
CPSF4-207ENST00000451876 DNAJC5Q9H3Z4 198 aa39.68■■■■□ 3.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms