Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
NKX6-3A6NJ46 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NKX6-3A6NJ46 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NKX6-3A6NJ46 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NKX6-3A6NJ46 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NKX6-3A6NJ46 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.72■□□□□ 0.91
NKX6-3A6NJ46 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
NKX6-3A6NJ46 AL359258.2-201ENST00000564063 1566 ntBASIC20.72■□□□□ 0.91
NKX6-3A6NJ46 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
NKX6-3A6NJ46 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX6-3A6NJ46 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.71■□□□□ 0.91
NKX6-3A6NJ46 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX6-3A6NJ46 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX6-3A6NJ46 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX6-3A6NJ46 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
NKX6-3A6NJ46 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX6-3A6NJ46 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.7■□□□□ 0.9
NKX6-3A6NJ46 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX6-3A6NJ46 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX6-3A6NJ46 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
NKX6-3A6NJ46 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX6-3A6NJ46 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
NKX6-3A6NJ46 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.69■□□□□ 0.9
NKX6-3A6NJ46 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
NKX6-3A6NJ46 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 AC135731.1-201ENST00000569415 2548 ntBASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NKX6-3A6NJ46 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX6-3A6NJ46 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.67■□□□□ 0.9
NKX6-3A6NJ46 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 AL449106.1-201ENST00000608517 1980 ntBASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX6-3A6NJ46 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NKX6-3A6NJ46 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX6-3A6NJ46 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.65■□□□□ 0.9
NKX6-3A6NJ46 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NKX6-3A6NJ46 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NKX6-3A6NJ46 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NKX6-3A6NJ46 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX6-3A6NJ46 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
NKX6-3A6NJ46 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NKX6-3A6NJ46 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NKX6-3A6NJ46 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.64■□□□□ 0.89
NKX6-3A6NJ46 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
NKX6-3A6NJ46 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX6-3A6NJ46 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
NKX6-3A6NJ46 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NKX6-3A6NJ46 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
NKX6-3A6NJ46 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.63■□□□□ 0.89
NKX6-3A6NJ46 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NKX6-3A6NJ46 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX6-3A6NJ46 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX6-3A6NJ46 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 AC060814.1-201ENST00000554326 538 ntBASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 AC022413.1-201ENST00000624602 984 ntBASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.62■□□□□ 0.89
NKX6-3A6NJ46 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX6-3A6NJ46 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.61■□□□□ 0.89
NKX6-3A6NJ46 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX6-3A6NJ46 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
NKX6-3A6NJ46 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.6■□□□□ 0.89
NKX6-3A6NJ46 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX6-3A6NJ46 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
NKX6-3A6NJ46 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX6-3A6NJ46 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.6■□□□□ 0.89
NKX6-3A6NJ46 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX6-3A6NJ46 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.59■□□□□ 0.89
NKX6-3A6NJ46 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NKX6-3A6NJ46 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.58■□□□□ 0.89
NKX6-3A6NJ46 GPX1-201ENST00000419349 1106 ntBASIC20.58■□□□□ 0.89
NKX6-3A6NJ46 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.58■□□□□ 0.89
NKX6-3A6NJ46 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
NKX6-3A6NJ46 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX6-3A6NJ46 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX6-3A6NJ46 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms