Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC26.3■■□□□ 1.8
SHKBP1Q8TBC3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
SHKBP1Q8TBC3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SHKBP1Q8TBC3 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.3■■□□□ 1.8
SHKBP1Q8TBC3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.3■■□□□ 1.8
SHKBP1Q8TBC3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SHKBP1Q8TBC3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHKBP1Q8TBC3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHKBP1Q8TBC3 AL139393.2-201ENST00000608721 2025 ntBASIC26.29■■□□□ 1.8
SHKBP1Q8TBC3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SHKBP1Q8TBC3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SHKBP1Q8TBC3 KRT18P60-201ENST00000312876 1297 ntBASIC26.28■■□□□ 1.8
SHKBP1Q8TBC3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SHKBP1Q8TBC3 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SHKBP1Q8TBC3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SHKBP1Q8TBC3 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SHKBP1Q8TBC3 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
SHKBP1Q8TBC3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
SHKBP1Q8TBC3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.26■■□□□ 1.79
SHKBP1Q8TBC3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
SHKBP1Q8TBC3 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
SHKBP1Q8TBC3 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SHKBP1Q8TBC3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
SHKBP1Q8TBC3 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.25■■□□□ 1.79
SHKBP1Q8TBC3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.25■■□□□ 1.79
SHKBP1Q8TBC3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SHKBP1Q8TBC3 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC26.24■■□□□ 1.79
SHKBP1Q8TBC3 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
SHKBP1Q8TBC3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SHKBP1Q8TBC3 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SHKBP1Q8TBC3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SHKBP1Q8TBC3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHKBP1Q8TBC3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHKBP1Q8TBC3 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SHKBP1Q8TBC3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
SHKBP1Q8TBC3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SHKBP1Q8TBC3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC26.21■■□□□ 1.79
SHKBP1Q8TBC3 AL359258.2-201ENST00000564063 1566 ntBASIC26.21■■□□□ 1.79
SHKBP1Q8TBC3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.21■■□□□ 1.79
SHKBP1Q8TBC3 AC004987.1-201ENST00000428627 508 ntBASIC26.21■■□□□ 1.79
SHKBP1Q8TBC3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
SHKBP1Q8TBC3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
SHKBP1Q8TBC3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.2■■□□□ 1.78
SHKBP1Q8TBC3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SHKBP1Q8TBC3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SHKBP1Q8TBC3 AC007029.1-201ENST00000604183 313 ntBASIC26.2■■□□□ 1.78
SHKBP1Q8TBC3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC26.2■■□□□ 1.78
SHKBP1Q8TBC3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
SHKBP1Q8TBC3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SHKBP1Q8TBC3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC26.19■■□□□ 1.78
SHKBP1Q8TBC3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.19■■□□□ 1.78
SHKBP1Q8TBC3 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.19■■□□□ 1.78
SHKBP1Q8TBC3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHKBP1Q8TBC3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
SHKBP1Q8TBC3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
SHKBP1Q8TBC3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHKBP1Q8TBC3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHKBP1Q8TBC3 TSPY13P-201ENST00000338964 914 ntBASIC26.18■■□□□ 1.78
SHKBP1Q8TBC3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC26.18■■□□□ 1.78
SHKBP1Q8TBC3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHKBP1Q8TBC3 ATP5G2P3-201ENST00000429083 425 ntBASIC26.18■■□□□ 1.78
SHKBP1Q8TBC3 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.18■■□□□ 1.78
SHKBP1Q8TBC3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.18■■□□□ 1.78
SHKBP1Q8TBC3 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
SHKBP1Q8TBC3 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.17■■□□□ 1.78
SHKBP1Q8TBC3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SHKBP1Q8TBC3 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.16■■□□□ 1.78
SHKBP1Q8TBC3 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHKBP1Q8TBC3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHKBP1Q8TBC3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHKBP1Q8TBC3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHKBP1Q8TBC3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHKBP1Q8TBC3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHKBP1Q8TBC3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHKBP1Q8TBC3 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHKBP1Q8TBC3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC26.15■■□□□ 1.78
SHKBP1Q8TBC3 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SHKBP1Q8TBC3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
SHKBP1Q8TBC3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.14■■□□□ 1.78
SHKBP1Q8TBC3 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.14■■□□□ 1.78
SHKBP1Q8TBC3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
SHKBP1Q8TBC3 AP002414.2-202ENST00000590929 1450 ntBASIC26.13■■□□□ 1.77
SHKBP1Q8TBC3 SMPD5-203ENST00000639008 1464 ntBASIC26.13■■□□□ 1.77
SHKBP1Q8TBC3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC26.13■■□□□ 1.77
SHKBP1Q8TBC3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
SHKBP1Q8TBC3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHKBP1Q8TBC3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHKBP1Q8TBC3 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHKBP1Q8TBC3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SHKBP1Q8TBC3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC26.12■■□□□ 1.77
SHKBP1Q8TBC3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SHKBP1Q8TBC3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
SHKBP1Q8TBC3 AC009831.1-201ENST00000580420 1582 ntBASIC26.12■■□□□ 1.77
SHKBP1Q8TBC3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
SHKBP1Q8TBC3 GUK1-208ENST00000366728 842 ntTSL 2 BASIC26.11■■□□□ 1.77
SHKBP1Q8TBC3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SHKBP1Q8TBC3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SHKBP1Q8TBC3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SHKBP1Q8TBC3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.1■■□□□ 1.77
SHKBP1Q8TBC3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms