Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC18.9■□□□□ 0.62
HLA-DMBP28068 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC18.9■□□□□ 0.62
HLA-DMBP28068 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DMBP28068 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HLA-DMBP28068 DUX4L29-201ENST00000425409 679 ntBASIC18.9■□□□□ 0.62
HLA-DMBP28068 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC18.9■□□□□ 0.62
HLA-DMBP28068 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC18.9■□□□□ 0.62
HLA-DMBP28068 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC18.9■□□□□ 0.62
HLA-DMBP28068 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC18.9■□□□□ 0.62
HLA-DMBP28068 AL449106.1-201ENST00000608517 1980 ntBASIC18.9■□□□□ 0.62
HLA-DMBP28068 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DMBP28068 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HLA-DMBP28068 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HLA-DMBP28068 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.89■□□□□ 0.61
HLA-DMBP28068 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HLA-DMBP28068 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC18.89■□□□□ 0.61
HLA-DMBP28068 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HLA-DMBP28068 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HLA-DMBP28068 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HLA-DMBP28068 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
HLA-DMBP28068 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC18.88■□□□□ 0.61
HLA-DMBP28068 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DMBP28068 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DMBP28068 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DMBP28068 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC18.88■□□□□ 0.61
HLA-DMBP28068 ZNRF2P2-203ENST00000454624 420 ntBASIC18.87■□□□□ 0.61
HLA-DMBP28068 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
HLA-DMBP28068 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.87■□□□□ 0.61
HLA-DMBP28068 HGH1-207ENST00000628266 258 ntTSL 5 BASIC18.87■□□□□ 0.61
HLA-DMBP28068 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DMBP28068 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DMBP28068 AC110285.7-201ENST00000624417 1536 ntBASIC18.86■□□□□ 0.61
HLA-DMBP28068 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DMBP28068 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DMBP28068 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
HLA-DMBP28068 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HLA-DMBP28068 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DMBP28068 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC18.85■□□□□ 0.61
HLA-DMBP28068 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC18.85■□□□□ 0.61
HLA-DMBP28068 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DMBP28068 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DMBP28068 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DMBP28068 AC091060.1-201ENST00000623524 1766 ntBASIC18.84■□□□□ 0.61
HLA-DMBP28068 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC18.84■□□□□ 0.61
HLA-DMBP28068 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DMBP28068 AC021231.2-201ENST00000594613 730 ntBASIC18.84■□□□□ 0.61
HLA-DMBP28068 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HLA-DMBP28068 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DMBP28068 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
HLA-DMBP28068 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC18.82■□□□□ 0.6
HLA-DMBP28068 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HLA-DMBP28068 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC18.82■□□□□ 0.6
HLA-DMBP28068 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
HLA-DMBP28068 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC18.82■□□□□ 0.6
HLA-DMBP28068 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC18.82■□□□□ 0.6
HLA-DMBP28068 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HLA-DMBP28068 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DMBP28068 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DMBP28068 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC18.81■□□□□ 0.6
HLA-DMBP28068 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DMBP28068 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DMBP28068 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DMBP28068 PEX7-203ENST00000541292 945 ntTSL 5 BASIC18.81■□□□□ 0.6
HLA-DMBP28068 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC18.81■□□□□ 0.6
HLA-DMBP28068 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HLA-DMBP28068 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC18.81■□□□□ 0.6
HLA-DMBP28068 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DMBP28068 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DMBP28068 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC18.8■□□□□ 0.6
HLA-DMBP28068 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
HLA-DMBP28068 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC18.79■□□□□ 0.6
HLA-DMBP28068 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HLA-DMBP28068 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HLA-DMBP28068 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
HLA-DMBP28068 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
HLA-DMBP28068 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DMBP28068 AP004609.3-201ENST00000610705 1884 ntBASIC18.78■□□□□ 0.6
HLA-DMBP28068 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC18.78■□□□□ 0.6
HLA-DMBP28068 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC18.78■□□□□ 0.6
HLA-DMBP28068 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DMBP28068 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC18.77■□□□□ 0.6
HLA-DMBP28068 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.77■□□□□ 0.6
HLA-DMBP28068 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DMBP28068 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC18.77■□□□□ 0.59
HLA-DMBP28068 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DMBP28068 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DMBP28068 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DMBP28068 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DMBP28068 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DMBP28068 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DMBP28068 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DMBP28068 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DMBP28068 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DMBP28068 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DMBP28068 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DMBP28068 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DMBP28068 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DMBP28068 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DMBP28068 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DMBP28068 AC135731.1-201ENST00000569415 2548 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms