Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.2■■□□□ 1.63
LRRK1Q38SD2 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.63
LRRK1Q38SD2 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
LRRK1Q38SD2 AC060814.1-201ENST00000554326 538 ntBASIC25.2■■□□□ 1.63
LRRK1Q38SD2 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.2■■□□□ 1.63
LRRK1Q38SD2 GPX1-201ENST00000419349 1106 ntBASIC25.2■■□□□ 1.62
LRRK1Q38SD2 ABHD17AP3-201ENST00000503096 1137 ntBASIC25.2■■□□□ 1.62
LRRK1Q38SD2 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.19■■□□□ 1.62
LRRK1Q38SD2 DRD5P2-201ENST00000421395 2012 ntBASIC25.19■■□□□ 1.62
LRRK1Q38SD2 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
LRRK1Q38SD2 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
LRRK1Q38SD2 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
LRRK1Q38SD2 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.18■■□□□ 1.62
LRRK1Q38SD2 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
LRRK1Q38SD2 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
LRRK1Q38SD2 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
LRRK1Q38SD2 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
LRRK1Q38SD2 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC25.17■■□□□ 1.62
LRRK1Q38SD2 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.17■■□□□ 1.62
LRRK1Q38SD2 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.17■■□□□ 1.62
LRRK1Q38SD2 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC25.17■■□□□ 1.62
LRRK1Q38SD2 AC018358.1-201ENST00000631079 1402 ntBASIC25.17■■□□□ 1.62
LRRK1Q38SD2 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
LRRK1Q38SD2 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
LRRK1Q38SD2 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
LRRK1Q38SD2 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
LRRK1Q38SD2 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC25.15■■□□□ 1.62
LRRK1Q38SD2 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC25.15■■□□□ 1.62
LRRK1Q38SD2 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC25.14■■□□□ 1.62
LRRK1Q38SD2 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
LRRK1Q38SD2 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.14■■□□□ 1.62
LRRK1Q38SD2 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.14■■□□□ 1.62
LRRK1Q38SD2 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
LRRK1Q38SD2 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
LRRK1Q38SD2 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
LRRK1Q38SD2 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.13■■□□□ 1.61
LRRK1Q38SD2 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.13■■□□□ 1.61
LRRK1Q38SD2 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
LRRK1Q38SD2 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
LRRK1Q38SD2 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
LRRK1Q38SD2 BRD4-212ENST00000630599 726 ntTSL 2 BASIC25.12■■□□□ 1.61
LRRK1Q38SD2 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
LRRK1Q38SD2 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
LRRK1Q38SD2 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.12■■□□□ 1.61
LRRK1Q38SD2 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
LRRK1Q38SD2 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
LRRK1Q38SD2 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
LRRK1Q38SD2 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
LRRK1Q38SD2 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC25.11■■□□□ 1.61
LRRK1Q38SD2 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.11■■□□□ 1.61
LRRK1Q38SD2 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
LRRK1Q38SD2 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
LRRK1Q38SD2 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
LRRK1Q38SD2 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
LRRK1Q38SD2 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
LRRK1Q38SD2 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.1■■□□□ 1.61
LRRK1Q38SD2 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
LRRK1Q38SD2 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.1■■□□□ 1.61
LRRK1Q38SD2 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
LRRK1Q38SD2 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
LRRK1Q38SD2 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
LRRK1Q38SD2 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
LRRK1Q38SD2 AC092296.2-201ENST00000589470 999 ntBASIC25.09■■□□□ 1.61
LRRK1Q38SD2 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
LRRK1Q38SD2 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.09■■□□□ 1.61
LRRK1Q38SD2 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC25.08■■□□□ 1.61
LRRK1Q38SD2 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
LRRK1Q38SD2 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
LRRK1Q38SD2 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
LRRK1Q38SD2 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.08■■□□□ 1.61
LRRK1Q38SD2 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.61
LRRK1Q38SD2 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
LRRK1Q38SD2 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
LRRK1Q38SD2 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.07■■□□□ 1.6
LRRK1Q38SD2 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
LRRK1Q38SD2 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
LRRK1Q38SD2 PROC-203ENST00000409048 1586 ntTSL 5 BASIC25.06■■□□□ 1.6
LRRK1Q38SD2 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
LRRK1Q38SD2 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC25.05■■□□□ 1.6
LRRK1Q38SD2 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
LRRK1Q38SD2 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
LRRK1Q38SD2 AL157400.5-201ENST00000507624 621 ntBASIC25.04■■□□□ 1.6
LRRK1Q38SD2 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
LRRK1Q38SD2 RARRES2P2-201ENST00000394842 485 ntBASIC25.03■■□□□ 1.6
LRRK1Q38SD2 AC022413.1-201ENST00000624602 984 ntBASIC25.03■■□□□ 1.6
LRRK1Q38SD2 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
LRRK1Q38SD2 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
LRRK1Q38SD2 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC25.03■■□□□ 1.6
LRRK1Q38SD2 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
LRRK1Q38SD2 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
LRRK1Q38SD2 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
LRRK1Q38SD2 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
LRRK1Q38SD2 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.02■■□□□ 1.6
LRRK1Q38SD2 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
LRRK1Q38SD2 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
LRRK1Q38SD2 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
LRRK1Q38SD2 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
LRRK1Q38SD2 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.99■■□□□ 1.59
LRRK1Q38SD2 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
LRRK1Q38SD2 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms