Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV40A0A0B4J280 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV40A0A0B4J280 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.88
TRAV40A0A0B4J280 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRAV40A0A0B4J280 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
TRAV40A0A0B4J280 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
TRAV40A0A0B4J280 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV40A0A0B4J280 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV40A0A0B4J280 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.56■□□□□ 0.88
TRAV40A0A0B4J280 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.56■□□□□ 0.88
TRAV40A0A0B4J280 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV40A0A0B4J280 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
TRAV40A0A0B4J280 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.56■□□□□ 0.88
TRAV40A0A0B4J280 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.55■□□□□ 0.88
TRAV40A0A0B4J280 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
TRAV40A0A0B4J280 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV40A0A0B4J280 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV40A0A0B4J280 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV40A0A0B4J280 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
TRAV40A0A0B4J280 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV40A0A0B4J280 AC126177.7-201ENST00000547904 679 ntBASIC20.54■□□□□ 0.88
TRAV40A0A0B4J280 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV40A0A0B4J280 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAV40A0A0B4J280 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV40A0A0B4J280 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.53■□□□□ 0.88
TRAV40A0A0B4J280 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV40A0A0B4J280 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TRAV40A0A0B4J280 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.53■□□□□ 0.88
TRAV40A0A0B4J280 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV40A0A0B4J280 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV40A0A0B4J280 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV40A0A0B4J280 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAV40A0A0B4J280 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV40A0A0B4J280 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV40A0A0B4J280 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV40A0A0B4J280 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TRAV40A0A0B4J280 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV40A0A0B4J280 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV40A0A0B4J280 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV40A0A0B4J280 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV40A0A0B4J280 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.51■□□□□ 0.87
TRAV40A0A0B4J280 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.51■□□□□ 0.87
TRAV40A0A0B4J280 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV40A0A0B4J280 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.49■□□□□ 0.87
TRAV40A0A0B4J280 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.49■□□□□ 0.87
TRAV40A0A0B4J280 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV40A0A0B4J280 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV40A0A0B4J280 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV40A0A0B4J280 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.48■□□□□ 0.87
TRAV40A0A0B4J280 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV40A0A0B4J280 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
TRAV40A0A0B4J280 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV40A0A0B4J280 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.47■□□□□ 0.87
TRAV40A0A0B4J280 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV40A0A0B4J280 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.47■□□□□ 0.87
TRAV40A0A0B4J280 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV40A0A0B4J280 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV40A0A0B4J280 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV40A0A0B4J280 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV40A0A0B4J280 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV40A0A0B4J280 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV40A0A0B4J280 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAV40A0A0B4J280 AC092296.2-201ENST00000589470 999 ntBASIC20.46■□□□□ 0.87
TRAV40A0A0B4J280 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.45■□□□□ 0.86
TRAV40A0A0B4J280 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV40A0A0B4J280 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.45■□□□□ 0.86
TRAV40A0A0B4J280 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
TRAV40A0A0B4J280 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRAV40A0A0B4J280 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.45■□□□□ 0.86
TRAV40A0A0B4J280 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV40A0A0B4J280 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV40A0A0B4J280 NTF6A-201ENST00000591175 560 ntBASIC20.44■□□□□ 0.86
TRAV40A0A0B4J280 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV40A0A0B4J280 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV40A0A0B4J280 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV40A0A0B4J280 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAV40A0A0B4J280 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV40A0A0B4J280 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
TRAV40A0A0B4J280 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV40A0A0B4J280 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
TRAV40A0A0B4J280 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV40A0A0B4J280 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV40A0A0B4J280 AP002414.2-202ENST00000590929 1450 ntBASIC20.42■□□□□ 0.86
TRAV40A0A0B4J280 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV40A0A0B4J280 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV40A0A0B4J280 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV40A0A0B4J280 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV40A0A0B4J280 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.4■□□□□ 0.86
TRAV40A0A0B4J280 ECEL1P2-201ENST00000461596 1295 ntBASIC20.4■□□□□ 0.86
TRAV40A0A0B4J280 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV40A0A0B4J280 AL157400.5-201ENST00000507624 621 ntBASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms