RNA–Protein interactions for RNA: ENST00000619396.4

KHSRP-213, Transcript of KH-type splicing regulatory protein, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene KHSRP, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KHSRP-213ENST00000619396 UPF1Q92900 1129 aaKnown RBP eCLIP31.51■■■□□ 2.633e-35■■■■■ 76.2
KHSRP-213ENST00000619396 SERBP1Q8NC51 408 aaKnown RBP eCLIP30.66■■■□□ 2.51e-6■■■■■ 55.8
KHSRP-213ENST00000619396 UTP3Q9NQZ2 479 aaKnown RBP eCLIP32.23■■■□□ 2.752e-6■■■■■ 49.5
KHSRP-213ENST00000619396 PCBP2Q15366 365 aaKnown RBP eCLIP29.58■■■□□ 2.336e-11■■■■■ 46.9
KHSRP-213ENST00000619396 SF3B1O75533 1304 aaKnown RBP eCLIP30.77■■■□□ 2.521e-6■■■■■ 46.8
KHSRP-213ENST00000619396 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP31.14■■■□□ 2.588e-6■■■■■ 36.8
KHSRP-213ENST00000619396 U2AF2P26368 475 aaKnown RBP eCLIP34.69■■■■□ 3.147e-17■■■■■ 34.6
KHSRP-213ENST00000619396 SF3A3Q12874 501 aaKnown RBP eCLIP31.92■■■□□ 2.77e-7■■■■■ 31.7
KHSRP-213ENST00000619396 EFTUD2Q15029 972 aaKnown RBP eCLIP31.48■■■□□ 2.631e-7■■■■■ 30.7
KHSRP-213ENST00000619396 AKAP1Q92667 903 aaKnown RBP eCLIP27.72■■■□□ 2.037e-11■■■■■ 28.7
KHSRP-213ENST00000619396 PRPF4O43172 522 aaKnown RBP eCLIP31.64■■■□□ 2.665e-8■■■■■ 27
KHSRP-213ENST00000619396 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP22.82■■□□□ 1.241e-7■■■■□ 25.8
KHSRP-213ENST00000619396 SF3B4Q15427 424 aaKnown RBP eCLIP28.31■■■□□ 2.122e-8■■■■□ 25.1
KHSRP-213ENST00000619396 GTF2F1P35269 517 aaKnown RBP eCLIP35.31■■■■□ 3.241e-10■■■■□ 23.5
KHSRP-213ENST00000619396 U2AF1Q01081 240 aaKnown RBP eCLIP38.67■■■■□ 3.783e-11■■■■□ 22.7
KHSRP-213ENST00000619396 TIA1P31483 386 aaKnown RBP eCLIP28.84■■■□□ 2.215e-12■■■■□ 22.4
KHSRP-213ENST00000619396 AQRO60306 1485 aaKnown RBP eCLIP44.02■■■■■ 4.641e-7■■■■□ 21.5
KHSRP-213ENST00000619396 CPSF6Q16630 551 aaKnown RBP eCLIP29.25■■■□□ 2.273e-18■■■□□ 19.1
KHSRP-213ENST00000619396 DDX24Q9GZR7 859 aaKnown RBP eCLIP34.92■■■■□ 3.181e-7■■■□□ 18.7
KHSRP-213ENST00000619396 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.9■■■□□ 2.385e-6■■■□□ 18.3
KHSRP-213ENST00000619396 NONOQ15233 471 aaKnown RBP eCLIP33.56■■■□□ 2.964e-7■■■□□ 18.2
KHSRP-213ENST00000619396 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP34.35■■■■□ 3.092e-7■■■□□ 18.1
KHSRP-213ENST00000619396 PCBP1Q15365 356 aaKnown RBP eCLIP30.81■■■□□ 2.528e-8■■■□□ 17.6
KHSRP-213ENST00000619396 IGF2BP3O00425 579 aaKnown RBP eCLIP31.66■■■□□ 2.661e-7■■■□□ 17.1
KHSRP-213ENST00000619396 STAU2Q9NUL3 570 aaKnown RBP eCLIP31.27■■■□□ 2.64e-8■■■□□ 16.8
KHSRP-213ENST00000619396 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP28.8■■■□□ 2.28e-8■■■□□ 16.5
KHSRP-213ENST00000619396 RPS3P23396 243 aaKnown RBP eCLIP29.45■■■□□ 2.31e-8■■■□□ 16.1
KHSRP-213ENST00000619396 LIN28BQ6ZN17 250 aaKnown RBP eCLIP29.76■■■□□ 2.355e-7■■■□□ 15.5
KHSRP-213ENST00000619396 DHX30Q7L2E3 1194 aaKnown RBP eCLIP31.96■■■□□ 2.711e-15■■■□□ 15.3
KHSRP-213ENST00000619396 SMNDC1O75940 238 aaKnown RBP eCLIP31.1■■■□□ 2.572e-6■■■□□ 15
KHSRP-213ENST00000619396 RBM22Q9NW64 420 aaKnown RBP eCLIP30.26■■■□□ 2.432e-6■■■□□ 14.6
KHSRP-213ENST00000619396 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP31.95■■■□□ 2.77e-21■■□□□ 14.5
KHSRP-213ENST00000619396 SLTMQ9NWH9 1034 aaKnown RBP eCLIP32.37■■■□□ 2.774e-6■■□□□ 14.4
KHSRP-213ENST00000619396 FXR2P51116 673 aaKnown RBP eCLIP33.41■■■□□ 2.945e-8■■□□□ 14.2
KHSRP-213ENST00000619396 ZNF800Q2TB10 664 aaPredicted RBP eCLIP28.09■■■□□ 2.093e-7■■□□□ 14.1
KHSRP-213ENST00000619396 HNRNPKP61978 463 aaKnown RBP eCLIP27.17■■□□□ 1.941e-12■■□□□ 14
KHSRP-213ENST00000619396 GPKOWQ92917 476 aaPredicted RBP eCLIP33.87■■■■□ 3.011e-7■■□□□ 13.4
KHSRP-213ENST00000619396 GRWD1Q9BQ67 446 aaKnown RBP eCLIP41.24■■■■■ 4.196e-7■■□□□ 13.3
KHSRP-213ENST00000619396 PABPC4Q13310 644 aaKnown RBP eCLIP32.89■■■□□ 2.866e-8■■□□□ 13.1
KHSRP-213ENST00000619396 DDX55Q8NHQ9 600 aaKnown RBP eCLIP32.03■■■□□ 2.721e-21■■□□□ 12.8
KHSRP-213ENST00000619396 G3BP1Q13283 466 aaKnown RBP eCLIP35.98■■■■□ 3.353e-7■■□□□ 12.6
KHSRP-213ENST00000619396 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP29.94■■■□□ 2.385e-6■■□□□ 12.2
KHSRP-213ENST00000619396 NIPBLQ6KC79 2804 aaeCLIP21.71■■□□□ 1.076e-7■■□□□ 12.1
KHSRP-213ENST00000619396 BUD13Q9BRD0 619 aaKnown RBP eCLIP32.7■■■□□ 2.833e-12■■□□□ 11.9
KHSRP-213ENST00000619396 GRSF1Q12849 480 aaKnown RBP eCLIP29.49■■■□□ 2.312e-15■■□□□ 11.7
KHSRP-213ENST00000619396 RBFOX2O43251 390 aaKnown RBP eCLIP24.82■■□□□ 1.569e-6■■□□□ 11.7
KHSRP-213ENST00000619396 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP41.65■■■■■ 4.268e-7■■□□□ 11.6
KHSRP-213ENST00000619396 DDX3XO00571 662 aaKnown RBP eCLIP32.73■■■□□ 2.833e-20■□□□□ 11.1
KHSRP-213ENST00000619396 HNRNPMP52272 730 aaKnown RBP eCLIP41.87■■■■■ 4.295e-7■□□□□ 11
KHSRP-213ENST00000619396 PUM1Q14671 1186 aaKnown RBP eCLIP28.61■■■□□ 2.176e-7■□□□□ 10.8
KHSRP-213ENST00000619396 RBM15Q96T37 977 aaKnown RBP eCLIP31.76■■■□□ 2.683e-12■□□□□ 10.8
KHSRP-213ENST00000619396 FMR1Q06787 632 aaKnown RBP eCLIP34.36■■■■□ 3.091e-7■□□□□ 10.4
KHSRP-213ENST00000619396 PPIGQ13427 754 aaKnown RBP eCLIP28.83■■■□□ 2.214e-8■□□□□ 10.4
KHSRP-213ENST00000619396 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP35.78■■■■□ 3.326e-7■□□□□ 9.7
KHSRP-213ENST00000619396 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP43.37■■■■■ 4.539e-6■□□□□ 9.6
KHSRP-213ENST00000619396 TIAL1Q01085 375 aaKnown RBP eCLIP30.03■■■□□ 2.49e-7■□□□□ 9.5
KHSRP-213ENST00000619396 YBX3P16989 372 aaKnown RBP eCLIP31.59■■■□□ 2.655e-9■□□□□ 9.4
KHSRP-213ENST00000619396 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP30.87■■■□□ 2.536e-8■□□□□ 9.3
KHSRP-213ENST00000619396 ILF3Q12906 894 aaKnown RBP eCLIP27.72■■■□□ 2.031e-74■□□□□ 9.3
KHSRP-213ENST00000619396 METAP2P50579 478 aaKnown RBP eCLIP34.77■■■■□ 3.161e-8■□□□□ 9.2
KHSRP-213ENST00000619396 ZRANB2O95218 330 aaKnown RBP eCLIP34.09■■■■□ 3.054e-10■□□□□ 9.2
KHSRP-213ENST00000619396 FTOQ9C0B1 505 aaKnown RBP eCLIP35.22■■■■□ 3.232e-14■□□□□ 8.9
KHSRP-213ENST00000619396 PABPN1Q86U42 306 aaKnown RBP eCLIP48.75■■■■■ 5.45e-7■□□□□ 8.6
KHSRP-213ENST00000619396 SDAD1Q9NVU7 687 aaKnown RBP eCLIP31.01■■■□□ 2.555e-6■□□□□ 8.5
KHSRP-213ENST00000619396 LARP4Q71RC2 724 aaKnown RBP eCLIP30.1■■■□□ 2.418e-9■□□□□ 8.5
KHSRP-213ENST00000619396 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP27.7■■■□□ 2.024e-6■□□□□ 8.3
KHSRP-213ENST00000619396 ZNF622Q969S3 477 aaKnown RBP eCLIP33.52■■■□□ 2.961e-12■□□□□ 8.3
KHSRP-213ENST00000619396 LSM11P83369 360 aaKnown RBP eCLIP28.31■■■□□ 2.127e-7■□□□□ 8.2
KHSRP-213ENST00000619396 DDX6P26196 483 aaKnown RBP eCLIP28.9■■■□□ 2.222e-8■□□□□ 8.2
KHSRP-213ENST00000619396 MTPAPQ9NVV4 582 aaKnown RBP eCLIP29.99■■■□□ 2.394e-7■□□□□ 8.2
KHSRP-213ENST00000619396 DDX59Q5T1V6 619 aaKnown RBP eCLIP28.88■■■□□ 2.213e-25■□□□□ 8.2
Retrieved 71 of 71 RNA–protein pairs in 14.7 ms