RNA–Protein interactions for RNA: ENST00000371320.7

SSBP3-204, Transcript of single stranded DNA binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP3, Length 2,077 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-204ENST00000371320 PABPC4Q13310 644 aaKnown RBP eCLIP31.98■■■□□ 2.712e-66■■■■■ 36.3
SSBP3-204ENST00000371320 HNRNPLP14866 589 aaKnown RBP eCLIP29.09■■■□□ 2.253e-24■■■■■ 36.5
SSBP3-204ENST00000371320 UPF1Q92900 1129 aaKnown RBP eCLIP30.83■■■□□ 2.533e-13■□□□□ 10
SSBP3-204ENST00000371320 SF3A3Q12874 501 aaKnown RBP eCLIP30.38■■■□□ 2.456e-12■■■■■ 79.1
SSBP3-204ENST00000371320 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP31.29■■■□□ 2.61e-9■■■■■ 83.4
SSBP3-204ENST00000371320 ILF3Q12906 894 aaKnown RBP eCLIP27.02■■□□□ 1.922e-9■□□□□ 9
SSBP3-204ENST00000371320 PPIGQ13427 754 aaKnown RBP eCLIP27.92■■■□□ 2.064e-9■■□□□ 14.2
SSBP3-204ENST00000371320 PCBP2Q15366 365 aaKnown RBP eCLIP28.57■■■□□ 2.164e-9■■■■■ 71.4
SSBP3-204ENST00000371320 ZC3H11AO75152 810 aaKnown RBP eCLIP31.07■■■□□ 2.561e-8■□□□□ 9.1
SSBP3-204ENST00000371320 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP21.93■■□□□ 1.11e-8■■■■■ 26.8
SSBP3-204ENST00000371320 GPKOWQ92917 476 aaPredicted RBP eCLIP32.92■■■□□ 2.861e-8■■□□□ 12.3
SSBP3-204ENST00000371320 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP40.18■■■■■ 4.022e-8■■■□□ 17.5
SSBP3-204ENST00000371320 DDX3XO00571 662 aaKnown RBP eCLIP31.53■■■□□ 2.643e-8■■■□□ 15.9
SSBP3-204ENST00000371320 SMNDC1O75940 238 aaKnown RBP eCLIP29.13■■■□□ 2.255e-8■■■□□ 15.6
SSBP3-204ENST00000371320 XRCC6P12956 609 aaKnown RBP eCLIP35.21■■■■□ 3.231e-7■□□□□ 8.9
SSBP3-204ENST00000371320 AQRO60306 1485 aaKnown RBP eCLIP42.7■■■■■ 4.431e-7■■■■■ 27.3
SSBP3-204ENST00000371320 TBRG4Q969Z0 631 aaKnown RBP eCLIP28.65■■■□□ 2.181e-7■■■■■ 35.3
SSBP3-204ENST00000371320 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP27.46■■□□□ 1.992e-7■■■□□ 14.6
SSBP3-204ENST00000371320 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP29.06■■■□□ 2.242e-7■□□□□ 10.3
SSBP3-204ENST00000371320 BUD13Q9BRD0 619 aaKnown RBP eCLIP31.37■■■□□ 2.612e-7■□□□□ 10
SSBP3-204ENST00000371320 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP30.21■■■□□ 2.433e-7■■■■□ 26.1
SSBP3-204ENST00000371320 EFTUD2Q15029 972 aaKnown RBP eCLIP30.19■■■□□ 2.424e-7■■■■■ 32.3
SSBP3-204ENST00000371320 ZRANB2O95218 330 aaKnown RBP eCLIP32.2■■■□□ 2.754e-7■■■□□ 14.7
SSBP3-204ENST00000371320 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP25.31■■□□□ 1.644e-7■■■■■ 27
SSBP3-204ENST00000371320 TAF15Q92804 592 aaKnown RBP eCLIP24.11■■□□□ 1.456e-7■■■■□ 20.6
SSBP3-204ENST00000371320 KHSRPQ92945 711 aaKnown RBP eCLIP30.17■■■□□ 2.426e-7■■■□□ 16.7
SSBP3-204ENST00000371320 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP35.23■■■■□ 3.236e-7■■□□□ 12.6
SSBP3-204ENST00000371320 UTP3Q9NQZ2 479 aaKnown RBP eCLIP31.26■■■□□ 2.596e-7■■■■■ 128.1
SSBP3-204ENST00000371320 METAP2P50579 478 aaKnown RBP eCLIP33.76■■■□□ 2.997e-7■■□□□ 14.3
SSBP3-204ENST00000371320 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP26.38■■□□□ 1.818e-7■■■□□ 15.9
SSBP3-204ENST00000371320 TIA1P31483 386 aaKnown RBP eCLIP27.89■■■□□ 2.068e-7■■■■■ 30.6
SSBP3-204ENST00000371320 EIF4G2P78344 907 aaKnown RBP eCLIP40.67■■■■■ 4.18e-7■■■■□ 25.5
SSBP3-204ENST00000371320 PCBP1Q15365 356 aaKnown RBP eCLIP30.13■■■□□ 2.411e-6■■■■□ 22.1
SSBP3-204ENST00000371320 XPO5Q9HAV4 1204 aaKnown RBP eCLIP32.03■■■□□ 2.721e-6■■■■■ 31.8
SSBP3-204ENST00000371320 GTF2F1P35269 517 aaKnown RBP eCLIP33.27■■■□□ 2.921e-6■■■■□ 23.4
SSBP3-204ENST00000371320 PTBP1P26599 531 aaKnown RBP eCLIP26.59■■□□□ 1.851e-6■■■■□ 23.1
SSBP3-204ENST00000371320 HNRNPMP52272 730 aaKnown RBP eCLIP40.43■■■■■ 4.061e-6■■■■□ 26.1
SSBP3-204ENST00000371320 DDX24Q9GZR7 859 aaKnown RBP eCLIP34.09■■■■□ 3.051e-6■■■□□ 17.7
SSBP3-204ENST00000371320 SF3B4Q15427 424 aaKnown RBP eCLIP26.41■■□□□ 1.821e-6■■■■■ 27.4
SSBP3-204ENST00000371320 DDX6P26196 483 aaKnown RBP eCLIP28.2■■■□□ 2.11e-6■■□□□ 12.6
SSBP3-204ENST00000371320 TARDBPQ13148 414 aaKnown RBP eCLIP27.3■■□□□ 1.961e-6■■■□□ 15.9
SSBP3-204ENST00000371320 NONOQ15233 471 aaKnown RBP eCLIP32.66■■■□□ 2.821e-6■■■□□ 17.3
SSBP3-204ENST00000371320 FTOQ9C0B1 505 aaKnown RBP eCLIP33.89■■■■□ 3.021e-6■■□□□ 11.8
SSBP3-204ENST00000371320 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP30.02■■■□□ 2.42e-6■■■□□ 14.9
SSBP3-204ENST00000371320 AGGF1Q8N302 714 aaeCLIP30.04■■■□□ 2.42e-6■□□□□ 9.7
SSBP3-204ENST00000371320 DDX51Q8N8A6 666 aaKnown RBP eCLIP29.64■■■□□ 2.342e-6■■□□□ 14.4
SSBP3-204ENST00000371320 HNRNPCP07910 306 aaKnown RBP eCLIP27.34■■□□□ 1.972e-6■■■□□ 18.7
SSBP3-204ENST00000371320 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP29.43■■■□□ 2.32e-6■■■■■ 40.9
SSBP3-204ENST00000371320 EWSR1Q01844 656 aaKnown RBP eCLIP24.59■■□□□ 1.532e-6■■■□□ 18.8
SSBP3-204ENST00000371320 FUSP35637 526 aaKnown RBP eCLIP18.34■□□□□ 0.532e-6■■■□□ 16.5
SSBP3-204ENST00000371320 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP42.31■■■■■ 4.362e-6■■□□□ 13.6
SSBP3-204ENST00000371320 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP33.93■■■■□ 3.022e-6■■■□□ 16.3
SSBP3-204ENST00000371320 DHX30Q7L2E3 1194 aaKnown RBP eCLIP30.78■■■□□ 2.522e-6■■■□□ 18.9
SSBP3-204ENST00000371320 PHF6Q8IWS0 365 aaKnown RBP eCLIP27.72■■■□□ 2.032e-6■■■□□ 17
SSBP3-204ENST00000371320 RBFOX2O43251 390 aaKnown RBP eCLIP23.95■■□□□ 1.423e-6■□□□□ 10.7
SSBP3-204ENST00000371320 SLTMQ9NWH9 1034 aaKnown RBP eCLIP31.05■■■□□ 2.563e-6■■■□□ 18.1
SSBP3-204ENST00000371320 PRPF4O43172 522 aaKnown RBP eCLIP30.24■■■□□ 2.433e-6■■■□□ 17
SSBP3-204ENST00000371320 TIAL1Q01085 375 aaKnown RBP eCLIP28.95■■■□□ 2.233e-6■■■■□ 20.6
SSBP3-204ENST00000371320 MATR3P43243 847 aaKnown RBP eCLIP31.66■■■□□ 2.663e-6■■■□□ 14.6
SSBP3-204ENST00000371320 HNRNPUQ00839 825 aaKnown RBP eCLIP40■■■■□ 3.993e-6■□□□□ 10.4
SSBP3-204ENST00000371320 DDX52Q9Y2R4 599 aaKnown RBP eCLIP33.24■■■□□ 2.913e-6■■■□□ 18.4
SSBP3-204ENST00000371320 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.19■■■□□ 2.264e-6■■■□□ 16.4
SSBP3-204ENST00000371320 AARSP49588 968 aaKnown RBP eCLIP31.59■■■□□ 2.654e-6■■■■■ 36.2
SSBP3-204ENST00000371320 SF3B1O75533 1304 aaKnown RBP eCLIP29.82■■■□□ 2.364e-6■■■■■ 89.5
SSBP3-204ENST00000371320 DDX55Q8NHQ9 600 aaKnown RBP eCLIP31.01■■■□□ 2.565e-6■■□□□ 11.5
SSBP3-204ENST00000371320 PUM2Q8TB72 1066 aaKnown RBP eCLIP27.8■■■□□ 2.047e-6■■■■□ 22
SSBP3-204ENST00000371320 WRNQ14191 1432 aaPredicted RBP eCLIP45.58■■■■■ 4.897e-6■■■■■ 31.3
SSBP3-204ENST00000371320 FXR2P51116 673 aaKnown RBP eCLIP32.43■■■□□ 2.788e-6■■■■□ 21.8
SSBP3-204ENST00000371320 FMR1Q06787 632 aaKnown RBP eCLIP33■■■□□ 2.879e-6■□□□□ 9.4
Retrieved 69 of 69 RNA–protein pairs in 14.9 ms