RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W SEC2P17065 759 aa8.28□□□□□ -1.08
UPF3YGR072W GAR1P28007 205 aaKnown RBP8.28□□□□□ -1.08
UPF3YGR072W GCD11P32481 527 aaKnown RBP8.28□□□□□ -1.08
UPF3YGR072W LAM6Q08001 693 aa8.28□□□□□ -1.08
UPF3YGR072W ORC6P38826 435 aa8.27□□□□□ -1.09
UPF3YGR072W IFH1P39520 1085 aa8.27□□□□□ -1.09
UPF3YGR072W GCR2Q01722 534 aa8.27□□□□□ -1.09
UPF3YGR072W REF2P42073 533 aaPredicted RBP8.26□□□□□ -1.09
UPF3YGR072W SPT16P32558 1035 aaKnown RBP8.25□□□□□ -1.09
UPF3YGR072W FRK1Q03002 865 aaPredicted RBP8.23□□□□□ -1.09
UPF3YGR072W GBP2P25555 427 aaKnown RBP RIP-Chip data8.21□□□□□ -1.1 RIP-Chip
UPF3YGR072W YPR148CQ06523 435 aa8.2□□□□□ -1.1
UPF3YGR072W MVP1P40959 511 aaKnown RBP8.19□□□□□ -1.1
UPF3YGR072W RRN7P40992 514 aa8.19□□□□□ -1.1
UPF3YGR072W CDC4P07834 779 aa8.18□□□□□ -1.1
UPF3YGR072W BDP1P46678 594 aa8.18□□□□□ -1.1
UPF3YGR072W YPR109WQ06104 294 aa8.15□□□□□ -1.1
UPF3YGR072W COX6P00427 148 aa8.13□□□□□ -1.11
UPF3YGR072W RGR1P19263 1082 aa8.13□□□□□ -1.11
UPF3YGR072W MET22P32179 357 aa8.13□□□□□ -1.11
UPF3YGR072W PAT1P25644 796 aaKnown RBP8.1□□□□□ -1.11
UPF3YGR072W HED1Q03937 162 aa8.1□□□□□ -1.11
UPF3YGR072W VPS70P47161 811 aa8.09□□□□□ -1.11
UPF3YGR072W ERF2Q06551 359 aa8.09□□□□□ -1.11
UPF3YGR072W ENV9Q08651 330 aa8.09□□□□□ -1.11
UPF3YGR072W MAK21Q12176 1025 aaKnown RBP8.09□□□□□ -1.11
UPF3YGR072W KEX2P13134 814 aa8.07□□□□□ -1.12
UPF3YGR072W YDR444WQ04093 687 aa8.02□□□□□ -1.13
UPF3YGR072W ASH1P34233 588 aa8.01□□□□□ -1.13
UPF3YGR072W PAC1P39946 494 aaKnown RBP8.01□□□□□ -1.13
UPF3YGR072W MET32Q12041 191 aa8.01□□□□□ -1.13
UPF3YGR072W MOD5P07884 428 aa7.99□□□□□ -1.13
UPF3YGR072W PUS5Q06244 254 aa7.96□□□□□ -1.14
UPF3YGR072W AFT1P22149 690 aa7.95□□□□□ -1.14
UPF3YGR072W AGE1Q04412 482 aa7.95□□□□□ -1.14
UPF3YGR072W LCB5Q06147 687 aaKnown RBP7.95□□□□□ -1.14
UPF3YGR072W YDL176WQ12027 708 aa7.95□□□□□ -1.14
UPF3YGR072W TUB4P53378 473 aa7.93□□□□□ -1.14
UPF3YGR072W HST3P53687 447 aa7.93□□□□□ -1.14
UPF3YGR072W RRD1P40454 393 aaKnown RBP7.89□□□□□ -1.15
UPF3YGR072W PSE1P32337 1089 aaKnown RBP7.88□□□□□ -1.15
UPF3YGR072W YJR115WP47152 169 aa7.87□□□□□ -1.15
UPF3YGR072W PBS2P08018 668 aa7.84□□□□□ -1.15
UPF3YGR072W RTF1P53064 558 aa7.83□□□□□ -1.16
UPF3YGR072W CLB5P30283 435 aa7.82□□□□□ -1.16
UPF3YGR072W YNL115CP53925 644 aa7.82□□□□□ -1.16
UPF3YGR072W SIT4P20604 311 aa7.77□□□□□ -1.17
UPF3YGR072W CKB1P43639 278 aa7.77□□□□□ -1.17
UPF3YGR072W KXD1P53158 218 aa7.77□□□□□ -1.17
UPF3YGR072W TPD3P31383 635 aa7.76□□□□□ -1.17
UPF3YGR072W MSB3P48566 633 aaPredicted RBP7.76□□□□□ -1.17
UPF3YGR072W HXT10P43581 546 aa7.74□□□□□ -1.17
UPF3YGR072W CAF120P53836 1060 aa7.74□□□□□ -1.17
UPF3YGR072W SYH1Q02875 849 aaKnown RBP7.73□□□□□ -1.17
UPF3YGR072W MAM3Q12296 706 aa7.73□□□□□ -1.17
UPF3YGR072W PDC1P06169 563 aaKnown RBP7.72□□□□□ -1.17
UPF3YGR072W NIS1P53939 407 aa7.72□□□□□ -1.17
UPF3YGR072W ACO2P39533 789 aa7.71□□□□□ -1.18
UPF3YGR072W TEA1P47988 759 aa7.71□□□□□ -1.18
UPF3YGR072W UGA3P26370 528 aa7.69□□□□□ -1.18
UPF3YGR072W OPT2Q06593 877 aa7.69□□□□□ -1.18
UPF3YGR072W IES2P40154 320 aa7.68□□□□□ -1.18
UPF3YGR072W PTK2P47116 818 aaKnown RBP7.68□□□□□ -1.18
UPF3YGR072W SLY41P22215 453 aa7.65□□□□□ -1.18
UPF3YGR072W NUP42P49686 430 aaKnown RBP7.64□□□□□ -1.19
UPF3YGR072W SRF1Q12516 437 aa7.64□□□□□ -1.19
UPF3YGR072W DSF2P38213 736 aa7.63□□□□□ -1.19
UPF3YGR072W MTC5Q03897 1148 aa7.63□□□□□ -1.19
UPF3YGR072W YLR346CQ06139 101 aa7.63□□□□□ -1.19
UPF3YGR072W KIP2P28743 706 aa7.62□□□□□ -1.19
UPF3YGR072W FPK1P53739 893 aa7.62□□□□□ -1.19
UPF3YGR072W TRK2P28584 889 aa7.61□□□□□ -1.19
UPF3YGR072W RPA14P50106 137 aa7.6□□□□□ -1.19
UPF3YGR072W YDL206WQ12424 762 aa7.6□□□□□ -1.19
UPF3YGR072W IXR1P33417 597 aa7.59□□□□□ -1.19
UPF3YGR072W GLY1P37303 387 aaKnown RBP7.59□□□□□ -1.19
UPF3YGR072W YIR007WP40566 764 aa7.59□□□□□ -1.19
UPF3YGR072W YPR097WQ06839 1073 aa7.59□□□□□ -1.19
UPF3YGR072W ALR1Q08269 859 aa7.59□□□□□ -1.19
UPF3YGR072W MRT4P33201 236 aaKnown RBP7.58□□□□□ -1.2
UPF3YGR072W NUP85P46673 744 aa7.58□□□□□ -1.2
UPF3YGR072W YGR035CP53222 116 aa7.58□□□□□ -1.2
UPF3YGR072W PUS6P53294 404 aa7.58□□□□□ -1.2
UPF3YGR072W TYW1Q08960 810 aaKnown RBP7.58□□□□□ -1.2
UPF3YGR072W DIT2P21595 489 aa7.57□□□□□ -1.2
UPF3YGR072W TBF1Q02457 562 aa7.56□□□□□ -1.2
UPF3YGR072W YMR196WQ04336 1088 aa7.56□□□□□ -1.2
UPF3YGR072W SCW11P53189 542 aa7.55□□□□□ -1.2
UPF3YGR072W HPF1Q05164 967 aa7.55□□□□□ -1.2
UPF3YGR072W TY1A-BLQ12266 440 aa7.55□□□□□ -1.2
UPF3YGR072W SCJ1P25303 377 aa7.54□□□□□ -1.2
UPF3YGR072W MIP1P15801 1254 aa7.53□□□□□ -1.2
UPF3YGR072W TRM1P15565 570 aaKnown RBP7.52□□□□□ -1.21
UPF3YGR072W RTT106P40161 455 aa7.49□□□□□ -1.21
UPF3YGR072W BUB1P41695 1021 aaKnown RBP RIP-Chip data7.48□□□□□ -1.21not detected
UPF3YGR072W SAS10Q12136 610 aaPredicted RBP7.47□□□□□ -1.21
UPF3YGR072W HST2P53686 357 aa7.46□□□□□ -1.22
UPF3YGR072W AAD14P42884 376 aa7.45□□□□□ -1.22
UPF3YGR072W LSC2P53312 427 aa7.45□□□□□ -1.22
UPF3YGR072W ARG82P07250 355 aa7.44□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 7.5 ms