RNA–Protein interactions for RNA: YDR179C

CSN9, Transcript of Subunit of the Cop9 signalosome, yeast

Gene CSN9, Length 489 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSN9	YDR179C	BDP1	P46678	594 aa		5.31	□□□□□ -1.56
CSN9	YDR179C	HED1	Q03937	162 aa		5.3	□□□□□ -1.56
CSN9	YDR179C	SET1	P38827	1080 aa	Known RBP	5.28	□□□□□ -1.56
CSN9	YDR179C	RRD1	P40454	393 aa	Known RBP	5.28	□□□□□ -1.56
CSN9	YDR179C	ASH1	P34233	588 aa		5.27	□□□□□ -1.57
CSN9	YDR179C	IFH1	P39520	1085 aa		5.27	□□□□□ -1.57
CSN9	YDR179C	MET32	Q12041	191 aa		5.27	□□□□□ -1.57
CSN9	YDR179C	GAP1	P19145	602 aa	Predicted RBP	5.26	□□□□□ -1.57
CSN9	YDR179C	NUD1	P32336	851 aa		5.26	□□□□□ -1.57
CSN9	YDR179C	VHR2	P40041	505 aa		5.26	□□□□□ -1.57
CSN9	YDR179C	SPT16	P32558	1035 aa	Known RBP	5.24	□□□□□ -1.57
CSN9	YDR179C	AFT1	P22149	690 aa		5.22	□□□□□ -1.57
CSN9	YDR179C	TRK2	P28584	889 aa		5.22	□□□□□ -1.57
CSN9	YDR179C	RAD54	P32863	898 aa		5.22	□□□□□ -1.57
CSN9	YDR179C	ACO2	P39533	789 aa		5.22	□□□□□ -1.57
CSN9	YDR179C	GCD11	P32481	527 aa	Known RBP	5.21	□□□□□ -1.58
CSN9	YDR179C	RPP1B	P10622	106 aa	Known RBP	5.2	□□□□□ -1.58
CSN9	YDR179C	CAF120	P53836	1060 aa		5.19	□□□□□ -1.58
CSN9	YDR179C	RRN7	P40992	514 aa		5.17	□□□□□ -1.58
CSN9	YDR179C	YJR115W	P47152	169 aa		5.17	□□□□□ -1.58
CSN9	YDR179C	YDR090C	Q03193	310 aa		5.17	□□□□□ -1.58
CSN9	YDR179C	TUM1	Q08686	304 aa	Known RBP	5.17	□□□□□ -1.58
CSN9	YDR179C	TFB4	Q12004	338 aa		5.16	□□□□□ -1.58
CSN9	YDR179C	PEX21	P50091	288 aa		5.15	□□□□□ -1.59
CSN9	YDR179C	NPL4	P33755	580 aa		5.13	□□□□□ -1.59
CSN9	YDR179C	KIC1	P38692	1080 aa		5.13	□□□□□ -1.59
CSN9	YDR179C	YPR148C	Q06523	435 aa		5.13	□□□□□ -1.59
CSN9	YDR179C	CSC1	Q06538	782 aa		5.13	□□□□□ -1.59
CSN9	YDR179C	MOD5	P07884	428 aa		5.12	□□□□□ -1.59
CSN9	YDR179C	HST3	P53687	447 aa		5.12	□□□□□ -1.59
CSN9	YDR179C	YGR035C	P53222	116 aa		5.11	□□□□□ -1.59
CSN9	YDR179C	REF2	P42073	533 aa	Predicted RBP	5.1	□□□□□ -1.59
CSN9	YDR179C	LSB3	P43603	459 aa	Known RBP	5.1	□□□□□ -1.59
CSN9	YDR179C	HPF1	Q05164	967 aa		5.09	□□□□□ -1.59
CSN9	YDR179C	MAK21	Q12176	1025 aa	Known RBP	5.09	□□□□□ -1.59
CSN9	YDR179C	ICP55	P40051	511 aa		5.06	□□□□□ -1.6
CSN9	YDR179C	PUS5	Q06244	254 aa		5.06	□□□□□ -1.6
CSN9	YDR179C	ORC6	P38826	435 aa		5.05	□□□□□ -1.6
CSN9	YDR179C	VPS70	P47161	811 aa		5.05	□□□□□ -1.6
CSN9	YDR179C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	5.05	□□□□□ -1.6	not detected
CSN9	YDR179C	OPT2	Q06593	877 aa		5.05	□□□□□ -1.6
CSN9	YDR179C	YIR007W	P40566	764 aa		5.04	□□□□□ -1.6
CSN9	YDR179C	ERF2	Q06551	359 aa		5.04	□□□□□ -1.6
CSN9	YDR179C	COX6	P00427	148 aa		5.03	□□□□□ -1.6
CSN9	YDR179C	PAT1	P25644	796 aa	Known RBP	5.03	□□□□□ -1.6
CSN9	YDR179C	PAC1	P39946	494 aa	Known RBP	5.03	□□□□□ -1.6
CSN9	YDR179C	CKB1	P43639	278 aa		5.03	□□□□□ -1.6
CSN9	YDR179C	MVP1	P40959	511 aa	Known RBP	4.99	□□□□□ -1.61
CSN9	YDR179C	MSB3	P48566	633 aa	Predicted RBP	4.99	□□□□□ -1.61
CSN9	YDR179C	GLY1	P37303	387 aa	Known RBP	4.97	□□□□□ -1.61
CSN9	YDR179C	PUS1	Q12211	544 aa	Known RBP	4.97	□□□□□ -1.61
CSN9	YDR179C	KEX2	P13134	814 aa		4.96	□□□□□ -1.62
CSN9	YDR179C	AGE1	Q04412	482 aa		4.96	□□□□□ -1.62
CSN9	YDR179C	YPR109W	Q06104	294 aa		4.96	□□□□□ -1.62
CSN9	YDR179C	RGR1	P19263	1082 aa		4.95	□□□□□ -1.62
CSN9	YDR179C	PTK2	P47116	818 aa	Known RBP	4.94	□□□□□ -1.62
CSN9	YDR179C	TY1A-BL	Q12266	440 aa		4.94	□□□□□ -1.62
CSN9	YDR179C	PBS2	P08018	668 aa		4.93	□□□□□ -1.62
CSN9	YDR179C	MDJ1	P35191	511 aa		4.92	□□□□□ -1.62
CSN9	YDR179C	YLR346C	Q06139	101 aa		4.92	□□□□□ -1.62
CSN9	YDR179C	YPR204W	Q08995	1032 aa		4.92	□□□□□ -1.62
CSN9	YDR179C	SAS10	Q12136	610 aa	Predicted RBP	4.92	□□□□□ -1.62
CSN9	YDR179C	CLB5	P30283	435 aa		4.91	□□□□□ -1.62
CSN9	YDR179C	PSE1	P32337	1089 aa	Known RBP	4.9	□□□□□ -1.63
CSN9	YDR179C	DMA1	P38823	416 aa		4.9	□□□□□ -1.63
CSN9	YDR179C	MAM3	Q12296	706 aa		4.9	□□□□□ -1.63
CSN9	YDR179C	SCW11	P53189	542 aa		4.89	□□□□□ -1.63
CSN9	YDR179C	TUB4	P53378	473 aa		4.89	□□□□□ -1.63
CSN9	YDR179C	PHM7	Q12252	991 aa		4.89	□□□□□ -1.63
CSN9	YDR179C	NUP85	P46673	744 aa		4.88	□□□□□ -1.63
CSN9	YDR179C	DSF2	P38213	736 aa		4.87	□□□□□ -1.63
CSN9	YDR179C	UGA3	P26370	528 aa		4.85	□□□□□ -1.63
CSN9	YDR179C	CCT8	P47079	568 aa	Known RBP	4.85	□□□□□ -1.63
CSN9	YDR179C	MIP1	P15801	1254 aa		4.84	□□□□□ -1.63
CSN9	YDR179C	DPH6	Q12429	685 aa		4.84	□□□□□ -1.63
CSN9	YDR179C	SPB4	P25808	606 aa	Predicted RBP	4.83	□□□□□ -1.64
CSN9	YDR179C	TPD3	P31383	635 aa		4.83	□□□□□ -1.64
CSN9	YDR179C	RTF1	P53064	558 aa		4.83	□□□□□ -1.64
CSN9	YDR179C	IES2	P40154	320 aa		4.82	□□□□□ -1.64
CSN9	YDR179C	CCP1	P00431	361 aa		4.81	□□□□□ -1.64
CSN9	YDR179C	YFL066C	P43538	392 aa		4.81	□□□□□ -1.64
CSN9	YDR179C	SRF1	Q12516	437 aa		4.81	□□□□□ -1.64
CSN9	YDR179C	RQC2	Q12532	1038 aa	Known RBP	4.81	□□□□□ -1.64
CSN9	YDR179C	TEA1	P47988	759 aa		4.8	□□□□□ -1.64
CSN9	YDR179C	SYH1	Q02875	849 aa	Known RBP	4.8	□□□□□ -1.64
CSN9	YDR179C	TYW1	Q08960	810 aa	Known RBP	4.8	□□□□□ -1.64
CSN9	YDR179C	NUP42	P49686	430 aa	Known RBP	4.78	□□□□□ -1.64
CSN9	YDR179C	YNL115C	P53925	644 aa		4.77	□□□□□ -1.65
CSN9	YDR179C	TY1A-MR1	Q04215	440 aa		4.77	□□□□□ -1.65
CSN9	YDR179C	SIT4	P20604	311 aa		4.76	□□□□□ -1.65
CSN9	YDR179C	MRT4	P33201	236 aa	Known RBP	4.76	□□□□□ -1.65
CSN9	YDR179C	ROG3	P43602	733 aa		4.76	□□□□□ -1.65
CSN9	YDR179C	HXT10	P43581	546 aa		4.75	□□□□□ -1.65
CSN9	YDR179C	NSG2	P53898	299 aa		4.75	□□□□□ -1.65
CSN9	YDR179C	JJJ3	P47138	172 aa		4.74	□□□□□ -1.65
CSN9	YDR179C	KXD1	P53158	218 aa		4.73	□□□□□ -1.65
CSN9	YDR179C	YMR196W	Q04336	1088 aa		4.73	□□□□□ -1.65
CSN9	YDR179C	PDC1	P06169	563 aa	Known RBP	4.72	□□□□□ -1.65
CSN9	YDR179C	DIT2	P21595	489 aa		4.72	□□□□□ -1.65
CSN9	YDR179C	LYS5	P50113	272 aa		4.72	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms