RNA–Protein interactions for RNA: YDR179C

CSN9, Transcript of Subunit of the Cop9 signalosome, yeast

Gene CSN9, Length 489 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSN9	YDR179C	FAP1	P53971	965 aa		11.77	□□□□□ -0.53
CSN9	YDR179C	MTC1	P47018	478 aa	Known RBP	11.29	□□□□□ -0.6
CSN9	YDR179C	PRY3	P47033	881 aa		11.17	□□□□□ -0.62
CSN9	YDR179C	YCK3	P39962	524 aa		10.75	□□□□□ -0.69
CSN9	YDR179C	AAD16	Q02895	342 aa		10.5	□□□□□ -0.73
CSN9	YDR179C	PRI1	P10363	409 aa		10.41	□□□□□ -0.74
CSN9	YDR179C	HAA1	Q12753	694 aa	Known RBP	10.41	□□□□□ -0.74
CSN9	YDR179C	TSR3	Q12094	313 aa	Known RBP	9.74	□□□□□ -0.85
CSN9	YDR179C	RPG1	P38249	964 aa	Known RBP	9.62	□□□□□ -0.87
CSN9	YDR179C	ISW2	Q08773	1120 aa		9.6	□□□□□ -0.87
CSN9	YDR179C	YGL015C	P33199	130 aa		9.35	□□□□□ -0.91
CSN9	YDR179C	BUD31	P25337	157 aa	Predicted RBP	9.3	□□□□□ -0.92
CSN9	YDR179C	MRPL32	P25348	183 aa		9.28	□□□□□ -0.92
CSN9	YDR179C	DRS1	P32892	752 aa	Known RBP	8.96	□□□□□ -0.98
CSN9	YDR179C	CDC27	P38042	758 aa		8.68	□□□□□ -1.02
CSN9	YDR179C	SIS1	P25294	352 aa	Known RBP	8.61	□□□□□ -1.03
CSN9	YDR179C	RSE1	Q04693	1361 aa	Known RBP	8.56	□□□□□ -1.04
CSN9	YDR179C	MAP2	P38174	421 aa	Known RBP	8.54	□□□□□ -1.04
CSN9	YDR179C	UBP10	P53874	792 aa	Predicted RBP	8.54	□□□□□ -1.04
CSN9	YDR179C	DIP2	Q12220	943 aa	Predicted RBP	8.44	□□□□□ -1.06
CSN9	YDR179C	REB1	P21538	810 aa		8.43	□□□□□ -1.06
CSN9	YDR179C	RPL17A	P05740	184 aa	Known RBP	8.4	□□□□□ -1.06
CSN9	YDR179C	RPL17B	P46990	184 aa	Known RBP	8.4	□□□□□ -1.06
CSN9	YDR179C	UBP9	P39967	754 aa		8.32	□□□□□ -1.08
CSN9	YDR179C	YKR023W	P36119	530 aa	Known RBP	8.3	□□□□□ -1.08
CSN9	YDR179C	TGL3	P40308	642 aa		8.21	□□□□□ -1.1
CSN9	YDR179C	TIF4632	P39936	914 aa	Known RBP	8.12	□□□□□ -1.11
CSN9	YDR179C	DCD1	P06773	312 aa		8.1	□□□□□ -1.11
CSN9	YDR179C	TFC8	Q12308	588 aa		8.09	□□□□□ -1.11
CSN9	YDR179C	HO	P09932	586 aa		8.07	□□□□□ -1.12
CSN9	YDR179C	SCY1	P53009	804 aa		8.06	□□□□□ -1.12
CSN9	YDR179C	SPT21	P35209	758 aa		8.04	□□□□□ -1.12
CSN9	YDR179C	SLX5	P32828	619 aa	Known RBP	8.01	□□□□□ -1.13
CSN9	YDR179C	YBL029C-A	Q3E756	94 aa		7.8	□□□□□ -1.16
CSN9	YDR179C	AVT3	P36062	692 aa		7.78	□□□□□ -1.16
CSN9	YDR179C	MST1	P07236	462 aa		7.77	□□□□□ -1.17
CSN9	YDR179C	BCH2	P36122	765 aa		7.77	□□□□□ -1.17
CSN9	YDR179C	VNX1	P42839	908 aa		7.67	□□□□□ -1.18
CSN9	YDR179C	AIR2	Q12476	344 aa	Known RBP	7.64	□□□□□ -1.19
CSN9	YDR179C	YOR238W	Q08634	303 aa		7.54	□□□□□ -1.2
CSN9	YDR179C	FKH1	P40466	484 aa		7.53	□□□□□ -1.2
CSN9	YDR179C	SPP1	Q03012	353 aa		7.53	□□□□□ -1.2
CSN9	YDR179C	YJL171C	P46992	396 aa		7.49	□□□□□ -1.21
CSN9	YDR179C	BDF1	P35817	686 aa		7.46	□□□□□ -1.22
CSN9	YDR179C	EPS1	P40557	701 aa		7.43	□□□□□ -1.22
CSN9	YDR179C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	7.42	□□□□□ -1.22	not detected
CSN9	YDR179C	RIM101	P33400	625 aa		7.4	□□□□□ -1.22
CSN9	YDR179C	WSC3	Q12215	556 aa		7.4	□□□□□ -1.22
CSN9	YDR179C	TIF11	P38912	153 aa	Known RBP	7.38	□□□□□ -1.23
CSN9	YDR179C	BMT6	Q12291	365 aa		7.31	□□□□□ -1.24
CSN9	YDR179C	YAP5	P40574	245 aa		7.27	□□□□□ -1.25
CSN9	YDR179C	IOC2	Q12072	812 aa		7.27	□□□□□ -1.25
CSN9	YDR179C	LDB19	Q12502	818 aa		7.27	□□□□□ -1.25
CSN9	YDR179C	BFR2	Q06631	534 aa	Known RBP	7.19	□□□□□ -1.26
CSN9	YDR179C	ULI1	P43604	169 aa		7.18	□□□□□ -1.26
CSN9	YDR179C	OXP1	P28273	1286 aa		7.14	□□□□□ -1.27
CSN9	YDR179C	RGA2	Q06407	1009 aa		7.14	□□□□□ -1.27
CSN9	YDR179C	GTT3	P39996	337 aa		7.08	□□□□□ -1.28
CSN9	YDR179C	RTG1	P32607	177 aa		7	□□□□□ -1.29
CSN9	YDR179C	NCR1	Q12200	1170 aa		6.99	□□□□□ -1.29
CSN9	YDR179C	BCK2	P33306	851 aa		6.94	□□□□□ -1.3
CSN9	YDR179C	PIB1	Q06651	286 aa		6.93	□□□□□ -1.3
CSN9	YDR179C	MSB4	Q12317	492 aa		6.93	□□□□□ -1.3
CSN9	YDR179C	BBC1	P47068	1157 aa		6.92	□□□□□ -1.3
CSN9	YDR179C	TRP5	P00931	707 aa	Known RBP	6.91	□□□□□ -1.3
CSN9	YDR179C	PTP3	P40048	928 aa		6.91	□□□□□ -1.3
CSN9	YDR179C	AI2	P03876	854 aa		6.9	□□□□□ -1.3
CSN9	YDR179C	EAP1	P36041	632 aa	Known RBP	6.9	□□□□□ -1.3
CSN9	YDR179C	SEC61	P32915	480 aa		6.88	□□□□□ -1.31
CSN9	YDR179C	YNL035C	P53962	389 aa	Known RBP	6.87	□□□□□ -1.31
CSN9	YDR179C	YIL055C	P40523	627 aa	Known RBP	6.85	□□□□□ -1.31
CSN9	YDR179C	RSM7	P47150	247 aa		6.85	□□□□□ -1.31
CSN9	YDR179C	YOL036W	Q08206	761 aa		6.84	□□□□□ -1.31
CSN9	YDR179C	SET4	P42948	560 aa		6.83	□□□□□ -1.32
CSN9	YDR179C	CHL1	P22516	861 aa	Predicted RBP	6.79	□□□□□ -1.32
CSN9	YDR179C	RGA1	P39083	1007 aa		6.79	□□□□□ -1.32
CSN9	YDR179C	SAP30	P38429	201 aa		6.77	□□□□□ -1.33
CSN9	YDR179C	DAN4	P47179	1161 aa		6.74	□□□□□ -1.33
CSN9	YDR179C	PRE3	P38624	215 aa		6.73	□□□□□ -1.33
CSN9	YDR179C	XDJ1	P39102	459 aa		6.71	□□□□□ -1.34
CSN9	YDR179C	TFG1	P41895	735 aa	Predicted RBP	6.67	□□□□□ -1.34
CSN9	YDR179C	YDL129W	Q07555	291 aa		6.67	□□□□□ -1.34
CSN9	YDR179C	SAM3	Q08986	587 aa		6.63	□□□□□ -1.35
CSN9	YDR179C	VRP1	P37370	817 aa		6.62	□□□□□ -1.35
CSN9	YDR179C	SRC1	Q03707	834 aa		6.61	□□□□□ -1.35
CSN9	YDR179C	DPS1	P04802	557 aa	Known RBP	6.6	□□□□□ -1.35
CSN9	YDR179C	YDR344C	Q05510	147 aa		6.6	□□□□□ -1.35
CSN9	YDR179C	VMA1	P17255	1071 aa	Known RBP	6.59	□□□□□ -1.35
CSN9	YDR179C	PSD2	P53037	1138 aa	Known RBP	6.59	□□□□□ -1.35
CSN9	YDR179C	JIP4	Q03361	876 aa		6.59	□□□□□ -1.35
CSN9	YDR179C	YAH1	Q12184	172 aa	Known RBP	6.58	□□□□□ -1.36
CSN9	YDR179C	MRM1	P25270	412 aa		6.57	□□□□□ -1.36
CSN9	YDR179C	DBP1	P24784	617 aa	Known RBP	6.55	□□□□□ -1.36
CSN9	YDR179C	VPS29	P38759	282 aa		6.53	□□□□□ -1.36
CSN9	YDR179C	YFR006W	P43590	535 aa		6.52	□□□□□ -1.37
CSN9	YDR179C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	6.52	□□□□□ -1.37	not detected
CSN9	YDR179C	YLR271W	Q06152	274 aa		6.51	□□□□□ -1.37
CSN9	YDR179C	STS1	P38637	319 aa		6.5	□□□□□ -1.37
CSN9	YDR179C	PTC4	P38089	393 aa		6.46	□□□□□ -1.38
CSN9	YDR179C	YEL023C	P39992	682 aa		6.41	□□□□□ -1.38

Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms