Protein–RNA interactions for Protein: P53617

NRD1, Protein NRD1, yeastyeast

Known RBP RIP-Chip data

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
NRD1P53617 YML009W-BYML009W-B 477 nt20.94■□□□□ 0.94
NRD1P53617 NSR1YGR159C 1245 nt20.79■□□□□ 0.92
NRD1P53617 NOP1YDL014W 984 nt20.31■□□□□ 0.84
NRD1P53617 YKL036CYKL036C 393 nt18.77■□□□□ 0.6
NRD1P53617 MDJ1YFL016C 1536 nt18.52■□□□□ 0.56
NRD1P53617 Q0297Q0297 156 nt17.82■□□□□ 0.44
NRD1P53617 SRX1YKL086W 384 nt17.78■□□□□ 0.44
NRD1P53617 YJL027CYJL027C 417 nt17.53■□□□□ 0.4
NRD1P53617 SCS3YGL126W 1143 nt17.12■□□□□ 0.33
NRD1P53617 YCR051WYCR051W 669 nt16.87■□□□□ 0.29
NRD1P53617 DBP2YNL112W 1641 nt16.41■□□□□ 0.22
NRD1P53617 YOL085CYOL085C 342 nt16.29■□□□□ 0.2
NRD1P53617 TRN1tP(UGG)A 72 nt16.1■□□□□ 0.17
NRD1P53617 SUF9tP(UGG)F 72 nt16.1■□□□□ 0.17
NRD1P53617 SUF8tP(UGG)H 72 nt16.1■□□□□ 0.17
NRD1P53617 tP(UGG)LtP(UGG)L 72 nt16.1■□□□□ 0.17
NRD1P53617 SUF7tP(UGG)M 72 nt16.1■□□□□ 0.17
NRD1P53617 tP(UGG)N1tP(UGG)N1 72 nt16.1■□□□□ 0.17
NRD1P53617 tP(UGG)N2tP(UGG)N2 72 nt16.1■□□□□ 0.17
NRD1P53617 tP(UGG)O1tP(UGG)O1 72 nt16.1■□□□□ 0.17
NRD1P53617 SUF11tP(UGG)O2 72 nt16.1■□□□□ 0.17
NRD1P53617 PKP1YIL042C 1185 nt16.06■□□□□ 0.16
NRD1P53617 RPP1BYDL130W 321 nt15.99■□□□□ 0.15
NRD1P53617 CCC1YLR220W 969 nt15.93■□□□□ 0.14
NRD1P53617 YBR190WYBR190W 312 nt15.74■□□□□ 0.11
NRD1P53617 RTC3YHR087W 336 nt15.39■□□□□ 0.05
NRD1P53617 SCJ1YMR214W 1134 nt15.35■□□□□ 0.05
NRD1P53617 RVS167YDR388W 1449 nt15.33■□□□□ 0.04
NRD1P53617 PET122YER153C 765 nt15.31■□□□□ 0.04
NRD1P53617 ATS1YAL020C 1002 nt15.3■□□□□ 0.04
NRD1P53617 tP(UGG)O3tP(UGG)O3 72 nt15.23■□□□□ 0.03
NRD1P53617 SCR1SCR1 522 nt15.07■□□□□ 0
NRD1P53617 RRN5YLR141W 1092 nt14.86□□□□□ -0.03 RIP-Chip
NRD1P53617 SHR5YOL110W 714 nt14.83□□□□□ -0.04
NRD1P53617 YDJ1YNL064C 1230 nt14.72□□□□□ -0.05
NRD1P53617 YER088W-BYER088W-B 147 nt14.58□□□□□ -0.08
NRD1P53617 RSB1YOR049C 1065 nt14.53□□□□□ -0.08
NRD1P53617 DEP1YAL013W 1218 nt14.44□□□□□ -0.1
NRD1P53617 URN1YPR152C 1398 nt14.43□□□□□ -0.1
NRD1P53617 GAR1YHR089C 618 nt14.41□□□□□ -0.1
NRD1P53617 PUT4YOR348C 1884 nt14.34□□□□□ -0.11
NRD1P53617 OPI9YLR338W 858 nt14.21□□□□□ -0.13
NRD1P53617 PST2YDR032C 597 nt14.19□□□□□ -0.14
NRD1P53617 YNL208WYNL208W 600 nt14.17□□□□□ -0.14
NRD1P53617 RPN10YHR200W 807 nt14.16□□□□□ -0.14
NRD1P53617 SAH1YER043C 1350 nt14.15□□□□□ -0.14
NRD1P53617 ARE1YCR048W 1833 nt14.08□□□□□ -0.15
NRD1P53617 TIR1YER011W 765 nt13.92□□□□□ -0.18
NRD1P53617 YHR049C-AYHR049C-A 297 nt13.88□□□□□ -0.19
NRD1P53617 POA1YBR022W 534 nt13.88□□□□□ -0.19
NRD1P53617 SSA1YAL005C 1929 nt13.79□□□□□ -0.2
NRD1P53617 PUN1YLR414C 792 nt13.77□□□□□ -0.21 RIP-Chip
NRD1P53617 YJR018WYJR018W 363 nt13.76□□□□□ -0.21
NRD1P53617 SSA3YBL075C 1950 nt13.73□□□□□ -0.21
NRD1P53617 PTC2YER089C 1395 nt13.64□□□□□ -0.23 RIP-Chip
NRD1P53617 SHU1YHL006C 453 nt13.63□□□□□ -0.23
NRD1P53617 SRB2YHR041C 633 nt13.63□□□□□ -0.23
NRD1P53617 YJR120WYJR120W 351 nt13.62□□□□□ -0.23
NRD1P53617 YKL097CYKL097C 411 nt13.59□□□□□ -0.23
NRD1P53617 BSC6YOL137W 1494 nt13.58□□□□□ -0.24
NRD1P53617 BUD23YCR047C 828 nt13.55□□□□□ -0.24 RIP-Chip
NRD1P53617 NAB2YGL122C 1578 nt13.44□□□□□ -0.26
NRD1P53617 RPP2BYDR382W 333 nt13.43□□□□□ -0.26
NRD1P53617 YAL037C-BYAL037C-B 975 nt13.43□□□□□ -0.26
NRD1P53617 WWM1YFL010C 636 nt13.33□□□□□ -0.28
NRD1P53617 FIS1YIL065C 468 nt13.3□□□□□ -0.28 RIP-Chip
NRD1P53617 DAL1YIR027C 1383 nt13.27□□□□□ -0.29
NRD1P53617 INM2YDR287W 879 nt13.24□□□□□ -0.29
NRD1P53617 FPR4YLR449W 1179 nt13.24□□□□□ -0.29
NRD1P53617 BDH2YAL061W 1254 nt13.21□□□□□ -0.29
NRD1P53617 HOM6YJR139C 1080 nt13.2□□□□□ -0.3
NRD1P53617 YGR021WYGR021W 873 nt13.19□□□□□ -0.3
NRD1P53617 PHO4YFR034C 939 nt13.16□□□□□ -0.3
NRD1P53617 MNP1YGL068W 585 nt13.16□□□□□ -0.3
NRD1P53617 YBL100CYBL100C 315 nt13.13□□□□□ -0.31
NRD1P53617 YOR139CYOR139C 393 nt13.11□□□□□ -0.31
NRD1P53617 YFL021C-AYFL021C-A 855 nt13.07□□□□□ -0.32
NRD1P53617 LSM3YLR438C-A 270 nt13.02□□□□□ -0.33
NRD1P53617 RKM5YLR137W 1104 nt13□□□□□ -0.33
NRD1P53617 FUN26YAL022C 1554 nt12.99□□□□□ -0.33
NRD1P53617 SPT5YML010W 3192 nt12.98□□□□□ -0.33
NRD1P53617 TRM9YML014W 840 nt12.94□□□□□ -0.34 RIP-Chip
NRD1P53617 NPL3YDR432W 1245 nt12.92□□□□□ -0.34
NRD1P53617 YPS1YLR120C 1710 nt12.91□□□□□ -0.34
NRD1P53617 YOL037CYOL037C 354 nt12.88□□□□□ -0.35
NRD1P53617 YDR095CYDR095C 411 nt12.83□□□□□ -0.36
NRD1P53617 CCT6YDR188W 1641 nt12.83□□□□□ -0.36
NRD1P53617 ALF1YNL148C 765 nt12.76□□□□□ -0.37
NRD1P53617 MEP2YNL142W 1500 nt12.74□□□□□ -0.37
NRD1P53617 YHR165W-AYHR165W-A 312 nt12.73□□□□□ -0.37
NRD1P53617 SUF2tP(AGG)C 72 nt12.67□□□□□ -0.38
NRD1P53617 SUF10tP(AGG)N 72 nt12.67□□□□□ -0.38
NRD1P53617 SIS1YNL007C 1059 nt12.62□□□□□ -0.39
NRD1P53617 YLR281CYLR281C 468 nt12.61□□□□□ -0.39
NRD1P53617 tM(CAU)CtM(CAU)C 72 nt12.59□□□□□ -0.39
NRD1P53617 IMT4tM(CAU)E 72 nt12.59□□□□□ -0.39
NRD1P53617 IMT3tM(CAU)J3 72 nt12.59□□□□□ -0.39
NRD1P53617 IMT1tM(CAU)O1 72 nt12.59□□□□□ -0.39
NRD1P53617 IMT2tM(CAU)P 72 nt12.59□□□□□ -0.39
NRD1P53617 DCW1YKL046C 1350 nt12.58□□□□□ -0.4
Retrieved 100 of 7,029 protein–RNA pairs in 14.7 ms