RNA–Protein interactions for RNA: YDR078C

SHU2, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU2, Length 672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU2YDR078C TY1A-JR2P47099 440 aa7.46□□□□□ -1.22
SHU2YDR078C TY1A-DR1Q03856 440 aa7.46□□□□□ -1.22
SHU2YDR078C TY1A-ML1Q04706 440 aaKnown RBP7.46□□□□□ -1.22
SHU2YDR078C TY1A-BRQ12217 440 aa7.46□□□□□ -1.22
SHU2YDR078C TY1A-NL2Q12470 440 aa7.46□□□□□ -1.22
SHU2YDR078C TY1A-GR2Q12485 440 aa7.46□□□□□ -1.22
SHU2YDR078C SEC2P17065 759 aa7.45□□□□□ -1.22
SHU2YDR078C IFH1P39520 1085 aa7.45□□□□□ -1.22
SHU2YDR078C CKB1P43639 278 aa7.45□□□□□ -1.22
SHU2YDR078C LAM6Q08001 693 aa7.45□□□□□ -1.22
SHU2YDR078C GAR1P28007 205 aaKnown RBP7.43□□□□□ -1.22
SHU2YDR078C GCD11P32481 527 aaKnown RBP7.43□□□□□ -1.22
SHU2YDR078C RPN1P38764 993 aaKnown RBP7.43□□□□□ -1.22
SHU2YDR078C ORC6P38826 435 aa7.43□□□□□ -1.22
SHU2YDR078C VPS70P47161 811 aa7.43□□□□□ -1.22
SHU2YDR078C GCR2Q01722 534 aa7.43□□□□□ -1.22
SHU2YDR078C NPL4P33755 580 aa7.42□□□□□ -1.22
SHU2YDR078C REF2P42073 533 aaPredicted RBP7.42□□□□□ -1.22
SHU2YDR078C SPB4P25808 606 aaPredicted RBP7.4□□□□□ -1.22
SHU2YDR078C SPT16P32558 1035 aaKnown RBP7.4□□□□□ -1.22
SHU2YDR078C FRK1Q03002 865 aaPredicted RBP7.39□□□□□ -1.23
SHU2YDR078C CDC4P07834 779 aa7.37□□□□□ -1.23
SHU2YDR078C GBP2P25555 427 aaKnown RBP RIP-Chip data7.36□□□□□ -1.23not detected
SHU2YDR078C MVP1P40959 511 aaKnown RBP7.36□□□□□ -1.23
SHU2YDR078C BDP1P46678 594 aa7.36□□□□□ -1.23
SHU2YDR078C RRN7P40992 514 aa7.34□□□□□ -1.23
SHU2YDR078C YPR109WQ06104 294 aa7.32□□□□□ -1.24
SHU2YDR078C MET22P32179 357 aa7.31□□□□□ -1.24
SHU2YDR078C COX6P00427 148 aa7.3□□□□□ -1.24
SHU2YDR078C DSF2P38213 736 aa7.3□□□□□ -1.24
SHU2YDR078C RGR1P19263 1082 aa7.29□□□□□ -1.24
SHU2YDR078C PBS2P08018 668 aa7.28□□□□□ -1.24
SHU2YDR078C HED1Q03937 162 aa7.28□□□□□ -1.24
SHU2YDR078C PAT1P25644 796 aaKnown RBP7.27□□□□□ -1.25
SHU2YDR078C ERF2Q06551 359 aa7.27□□□□□ -1.25
SHU2YDR078C ENV9Q08651 330 aa7.27□□□□□ -1.25
SHU2YDR078C MAK21Q12176 1025 aaKnown RBP7.27□□□□□ -1.25
SHU2YDR078C DMA2P53924 522 aa7.25□□□□□ -1.25
SHU2YDR078C KEX2P13134 814 aa7.24□□□□□ -1.25
SHU2YDR078C YDR444WQ04093 687 aa7.22□□□□□ -1.25
SHU2YDR078C PAC1P39946 494 aaKnown RBP7.21□□□□□ -1.26
SHU2YDR078C MET32Q12041 191 aa7.21□□□□□ -1.26
SHU2YDR078C YNR021WP53723 404 aaKnown RBP7.2□□□□□ -1.26
SHU2YDR078C MOD5P07884 428 aa7.19□□□□□ -1.26
SHU2YDR078C ASH1P34233 588 aa7.19□□□□□ -1.26
SHU2YDR078C MAM3Q12296 706 aa7.18□□□□□ -1.26
SHU2YDR078C YDL176WQ12027 708 aa7.17□□□□□ -1.26
SHU2YDR078C LCB5Q06147 687 aaKnown RBP7.16□□□□□ -1.26
SHU2YDR078C AFT1P22149 690 aa7.15□□□□□ -1.26
SHU2YDR078C AGE1Q04412 482 aa7.15□□□□□ -1.26
SHU2YDR078C PUS5Q06244 254 aa7.15□□□□□ -1.26
SHU2YDR078C KIN1P13185 1064 aa7.14□□□□□ -1.27
SHU2YDR078C IES2P40154 320 aa7.14□□□□□ -1.27
SHU2YDR078C TUB4P53378 473 aa7.12□□□□□ -1.27
SHU2YDR078C HST3P53687 447 aa7.12□□□□□ -1.27
SHU2YDR078C GLC3P32775 704 aa7.11□□□□□ -1.27
SHU2YDR078C NUP42P49686 430 aaKnown RBP7.11□□□□□ -1.27
SHU2YDR078C AIM7Q12156 149 aa7.11□□□□□ -1.27
SHU2YDR078C DIT2P21595 489 aa7.09□□□□□ -1.27
SHU2YDR078C RRD1P40454 393 aaKnown RBP7.09□□□□□ -1.27
SHU2YDR078C PSE1P32337 1089 aaKnown RBP7.07□□□□□ -1.28
SHU2YDR078C YJR115WP47152 169 aa7.07□□□□□ -1.28
SHU2YDR078C RLF2Q12495 606 aa7.06□□□□□ -1.28
SHU2YDR078C RTF1P53064 558 aa7.04□□□□□ -1.28
SHU2YDR078C CLB5P30283 435 aa7.03□□□□□ -1.28
SHU2YDR078C YNL115CP53925 644 aa7.02□□□□□ -1.29
SHU2YDR078C HGH1P48362 394 aaKnown RBP7.01□□□□□ -1.29
SHU2YDR078C ATF2P53296 535 aa7□□□□□ -1.29
SHU2YDR078C SIT4P20604 311 aa6.98□□□□□ -1.29
SHU2YDR078C TPD3P31383 635 aa6.97□□□□□ -1.29
SHU2YDR078C GUA1P38625 525 aaKnown RBP6.97□□□□□ -1.29
SHU2YDR078C MSB3P48566 633 aaPredicted RBP6.97□□□□□ -1.29
SHU2YDR078C KXD1P53158 218 aa6.97□□□□□ -1.29
SHU2YDR078C HXT10P43581 546 aa6.96□□□□□ -1.3
SHU2YDR078C CAF120P53836 1060 aa6.96□□□□□ -1.3
SHU2YDR078C PDC1P06169 563 aaKnown RBP6.94□□□□□ -1.3
SHU2YDR078C ACO2P39533 789 aa6.94□□□□□ -1.3
SHU2YDR078C HPC2Q01448 625 aa6.94□□□□□ -1.3
SHU2YDR078C SYH1Q02875 849 aaKnown RBP6.94□□□□□ -1.3
SHU2YDR078C NIS1P53939 407 aa6.92□□□□□ -1.3
SHU2YDR078C OPT2Q06593 877 aa6.92□□□□□ -1.3
SHU2YDR078C PTK2P47116 818 aaKnown RBP6.91□□□□□ -1.3
SHU2YDR078C TEA1P47988 759 aa6.91□□□□□ -1.3
SHU2YDR078C UGA3P26370 528 aa6.9□□□□□ -1.3
SHU2YDR078C TFB3Q03290 321 aa6.87□□□□□ -1.31
SHU2YDR078C SLY41P22215 453 aa6.86□□□□□ -1.31
SHU2YDR078C MTC5Q03897 1148 aa6.86□□□□□ -1.31
SHU2YDR078C SRF1Q12516 437 aa6.86□□□□□ -1.31
SHU2YDR078C YLR346CQ06139 101 aa6.85□□□□□ -1.31
SHU2YDR078C SSA2P10592 639 aaKnown RBP6.84□□□□□ -1.31
SHU2YDR078C KIP2P28743 706 aa6.84□□□□□ -1.31
SHU2YDR078C BRL1P38770 471 aa6.84□□□□□ -1.31
SHU2YDR078C FPK1P53739 893 aa6.83□□□□□ -1.32
SHU2YDR078C TRK2P28584 889 aa6.82□□□□□ -1.32
SHU2YDR078C MRT4P33201 236 aaKnown RBP6.82□□□□□ -1.32
SHU2YDR078C GLY1P37303 387 aaKnown RBP6.82□□□□□ -1.32
SHU2YDR078C YIR007WP40566 764 aa6.82□□□□□ -1.32
SHU2YDR078C CSN12P47130 423 aa6.82□□□□□ -1.32
SHU2YDR078C RPA14P50106 137 aa6.82□□□□□ -1.32
SHU2YDR078C YGR035CP53222 116 aa6.82□□□□□ -1.32
Retrieved 100 of 5,963 RNA–protein pairs in 8.6 ms