RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C TY1A-LR1P0CX68 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-MR2P0CX69 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-JR2P47099 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-DR1Q03856 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-ML1Q04706 440 aaKnown RBP4.22□□□□□ -1.73
VPS54YDR027C TY1A-BRQ12217 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-NL2Q12470 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-GR2Q12485 440 aa4.22□□□□□ -1.73
VPS54YDR027C SEC2P17065 759 aa4.21□□□□□ -1.73
VPS54YDR027C CST6P40535 587 aa4.21□□□□□ -1.73
VPS54YDR027C RRN7P40992 514 aa4.21□□□□□ -1.73
VPS54YDR027C PSE1P32337 1089 aaKnown RBP4.21□□□□□ -1.74
VPS54YDR027C MAM3Q12296 706 aa4.2□□□□□ -1.74
VPS54YDR027C FRK1Q03002 865 aaPredicted RBP4.19□□□□□ -1.74
VPS54YDR027C KEX2P13134 814 aa4.19□□□□□ -1.74
VPS54YDR027C CLB5P30283 435 aa4.19□□□□□ -1.74
VPS54YDR027C LAM6Q08001 693 aa4.19□□□□□ -1.74
VPS54YDR027C DMA1P38823 416 aa4.18□□□□□ -1.74
VPS54YDR027C AIR1P40507 360 aaKnown RBP4.18□□□□□ -1.74
VPS54YDR027C BRE2P43132 505 aa4.18□□□□□ -1.74
VPS54YDR027C GCR2Q01722 534 aa4.18□□□□□ -1.74
VPS54YDR027C RGA1P39083 1007 aa4.17□□□□□ -1.74
VPS54YDR027C CLA4P48562 842 aa4.17□□□□□ -1.74
VPS54YDR027C ERF2Q06551 359 aa4.17□□□□□ -1.74
VPS54YDR027C IES2P40154 320 aa4.16□□□□□ -1.74
VPS54YDR027C BDP1P46678 594 aa4.16□□□□□ -1.74
VPS54YDR027C DSF2P38213 736 aa4.16□□□□□ -1.74
VPS54YDR027C SAS10Q12136 610 aaPredicted RBP4.15□□□□□ -1.74
VPS54YDR027C CDC4P07834 779 aa4.15□□□□□ -1.75
VPS54YDR027C SPB4P25808 606 aaPredicted RBP4.14□□□□□ -1.75
VPS54YDR027C RTF1P53064 558 aa4.13□□□□□ -1.75
VPS54YDR027C HED1Q03937 162 aa4.13□□□□□ -1.75
VPS54YDR027C PAC1P39946 494 aaKnown RBP4.13□□□□□ -1.75
VPS54YDR027C TEA1P47988 759 aa4.13□□□□□ -1.75
VPS54YDR027C GBP2P25555 427 aaKnown RBP RIP-Chip data4.12□□□□□ -1.75not detected
VPS54YDR027C TUB4P53378 473 aa4.12□□□□□ -1.75
VPS54YDR027C YNL115CP53925 644 aa4.12□□□□□ -1.75
VPS54YDR027C NUP42P49686 430 aaKnown RBP4.11□□□□□ -1.75
VPS54YDR027C GAR1P28007 205 aaKnown RBP4.1□□□□□ -1.75
VPS54YDR027C AGE1Q04412 482 aa4.1□□□□□ -1.75
VPS54YDR027C RGA2Q06407 1009 aa4.1□□□□□ -1.75
VPS54YDR027C MOD5P07884 428 aa4.09□□□□□ -1.75
VPS54YDR027C SIT4P20604 311 aa4.09□□□□□ -1.75
VPS54YDR027C DIT2P21595 489 aa4.08□□□□□ -1.76
VPS54YDR027C KXD1P53158 218 aa4.08□□□□□ -1.76
VPS54YDR027C NIS1P53939 407 aa4.08□□□□□ -1.76
VPS54YDR027C YPL062WQ02781 134 aa4.08□□□□□ -1.76
VPS54YDR027C YMR196WQ04336 1088 aa4.08□□□□□ -1.76
VPS54YDR027C PUS5Q06244 254 aa4.08□□□□□ -1.76
VPS54YDR027C HST3P53687 447 aa4.08□□□□□ -1.76
VPS54YDR027C ASH1P34233 588 aa4.07□□□□□ -1.76
VPS54YDR027C MET32Q12041 191 aa4.06□□□□□ -1.76
VPS54YDR027C AFT1P22149 690 aa4.05□□□□□ -1.76
VPS54YDR027C SLY41P22215 453 aa4.05□□□□□ -1.76
VPS54YDR027C MET22P32179 357 aa4.05□□□□□ -1.76
VPS54YDR027C FPK1P53739 893 aa4.05□□□□□ -1.76
VPS54YDR027C ENV9Q08651 330 aa4.04□□□□□ -1.76
VPS54YDR027C TBF1Q02457 562 aa4.04□□□□□ -1.76
VPS54YDR027C HXT10P43581 546 aa4.03□□□□□ -1.76
VPS54YDR027C TPD3P31383 635 aa4.03□□□□□ -1.76
VPS54YDR027C RRD1P40454 393 aaKnown RBP4.02□□□□□ -1.77
VPS54YDR027C ATF2P53296 535 aa4.02□□□□□ -1.77
VPS54YDR027C SYH1Q02875 849 aaKnown RBP4.02□□□□□ -1.77
VPS54YDR027C YDR444WQ04093 687 aa4.02□□□□□ -1.77
VPS54YDR027C PDC1P06169 563 aaKnown RBP4.02□□□□□ -1.77
VPS54YDR027C PUS6P53294 404 aa4.02□□□□□ -1.77
VPS54YDR027C ALR1Q08269 859 aa4.02□□□□□ -1.77
VPS54YDR027C RPA14P50106 137 aa4□□□□□ -1.77
VPS54YDR027C HST2P53686 357 aa4□□□□□ -1.77
VPS54YDR027C YDL206WQ12424 762 aa4□□□□□ -1.77
VPS54YDR027C KIP2P28743 706 aa4□□□□□ -1.77
VPS54YDR027C YJR115WP47152 169 aa4□□□□□ -1.77
VPS54YDR027C YPR097WQ06839 1073 aa3.99□□□□□ -1.77
VPS54YDR027C MMP1Q12372 583 aa3.99□□□□□ -1.77
VPS54YDR027C SCJ1P25303 377 aa3.99□□□□□ -1.77
VPS54YDR027C LCB5Q06147 687 aaKnown RBP3.99□□□□□ -1.77
VPS54YDR027C TRM1P15565 570 aaKnown RBP3.98□□□□□ -1.77
VPS54YDR027C BUB1P41695 1021 aaKnown RBP RIP-Chip data3.98□□□□□ -1.77not detected
VPS54YDR027C UGA3P26370 528 aa3.98□□□□□ -1.77
VPS54YDR027C GLN1P32288 370 aaKnown RBP3.98□□□□□ -1.77
VPS54YDR027C IXR1P33417 597 aa3.98□□□□□ -1.77
VPS54YDR027C MSB3P48566 633 aaPredicted RBP3.98□□□□□ -1.77
VPS54YDR027C YNR021WP53723 404 aaKnown RBP3.97□□□□□ -1.77
VPS54YDR027C GLC3P32775 704 aa3.96□□□□□ -1.78
VPS54YDR027C SRF1Q12516 437 aa3.96□□□□□ -1.78
VPS54YDR027C ESS1P22696 170 aa3.95□□□□□ -1.78
VPS54YDR027C PTK2P47116 818 aaKnown RBP3.94□□□□□ -1.78
VPS54YDR027C YLR346CQ06139 101 aa3.94□□□□□ -1.78
VPS54YDR027C RTT106P40161 455 aa3.93□□□□□ -1.78
VPS54YDR027C MRT4P33201 236 aaKnown RBP3.93□□□□□ -1.78
VPS54YDR027C YJU3P28321 313 aa3.92□□□□□ -1.78
VPS54YDR027C TYW1Q08960 810 aaKnown RBP3.92□□□□□ -1.78
VPS54YDR027C YDL176WQ12027 708 aa3.92□□□□□ -1.78
VPS54YDR027C PKH3Q03306 898 aaPredicted RBP3.91□□□□□ -1.78
VPS54YDR027C NUP85P46673 744 aa3.9□□□□□ -1.78
VPS54YDR027C OPT2Q06593 877 aa3.9□□□□□ -1.78
VPS54YDR027C AIM7Q12156 149 aa3.9□□□□□ -1.78
VPS54YDR027C VAC17P25591 423 aa3.9□□□□□ -1.79
VPS54YDR027C CAF120P53836 1060 aa3.9□□□□□ -1.79
VPS54YDR027C RQC2Q12532 1038 aaKnown RBP3.9□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 39.7 ms