RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Spaca4Q80ZQ0 127 aa12.36□□□□□ -0.43
Ccdc88a-202ENSMUST00000109477 Cystm1Q8K353 104 aa12.36□□□□□ -0.43
Ccdc88a-202ENSMUST00000109477 Defb12Q8K4N3 78 aa12.36□□□□□ -0.43
Ccdc88a-202ENSMUST00000109477 Prr15lQ8JZM2 100 aa12.33□□□□□ -0.44
Ccdc88a-202ENSMUST00000109477 Dph3Q8K0W9 82 aa12.33□□□□□ -0.44
Ccdc88a-202ENSMUST00000109477 HydinQ80W93 5154 aa12.3□□□□□ -0.44
Ccdc88a-202ENSMUST00000109477 Ndufc1Q9CQY9 76 aa12.27□□□□□ -0.45
Ccdc88a-202ENSMUST00000109477 Fam229bQ8CF36 80 aa12.25□□□□□ -0.45
Ccdc88a-202ENSMUST00000109477 Defa21Q8C1P2 93 aa12.24□□□□□ -0.45
Ccdc88a-202ENSMUST00000109477 Gm2310J3QNJ2 377 aa12.19□□□□□ -0.46
Ccdc88a-202ENSMUST00000109477 PcloQ9QYX7 5068 aa12.18□□□□□ -0.46
Ccdc88a-202ENSMUST00000109477 7530416G11RikJ3QJX6 159 aa12.17□□□□□ -0.46
Ccdc88a-202ENSMUST00000109477 Mycbp2Q7TPH6 4711 aa12.15□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 Samd13D3YUG0 102 aa12.14□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 Lce1mQ9CR91 182 aa12.14□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 Igkv3-3A0A140T8Q0 119 aa12.13□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 Spink8Q09TK9 105 aa12.13□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 4930518I15RikQ3V2W7 57 aa12.13□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 Naa38Q9D2U5 125 aa12.12□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 D6Ertd527eA0A0N4SWI3 464 aa12.11□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 A0A286YE49 62 aa12.11□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 Cypt15B1AXS0 87 aa12.11□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 Rps29P62274 56 aa12.11□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 Serp2Q6TAW2 65 aa12.1□□□□□ -0.47
Ccdc88a-202ENSMUST00000109477 A530084C06RikQ3UTW2 186 aa12.07□□□□□ -0.48
Ccdc88a-202ENSMUST00000109477 GhrhP16043 103 aa11.97□□□□□ -0.49
Ccdc88a-202ENSMUST00000109477 BikO70337 150 aa11.95□□□□□ -0.5
Ccdc88a-202ENSMUST00000109477 Gm9736A0A1W2P7N1 277 aa11.94□□□□□ -0.5
Ccdc88a-202ENSMUST00000109477 Apoc4Q61268 124 aa11.93□□□□□ -0.5
Ccdc88a-202ENSMUST00000109477 B230307C23RikQ8BLB2 64 aa11.92□□□□□ -0.5
Ccdc88a-202ENSMUST00000109477 Defb13Q8R2I4 64 aa11.91□□□□□ -0.5
Ccdc88a-202ENSMUST00000109477 1700074P13RikQ9D9G7 251 aa11.91□□□□□ -0.5
Ccdc88a-202ENSMUST00000109477 Prr13Q9CQJ5 137 aa11.9□□□□□ -0.5
Ccdc88a-202ENSMUST00000109477 Lrp2A2ARV4 4660 aa11.88□□□□□ -0.51
Ccdc88a-202ENSMUST00000109477 Gm10267M0QWD8 85 aa11.87□□□□□ -0.51
Ccdc88a-202ENSMUST00000109477 Herc1E9PZP8 4859 aa11.87□□□□□ -0.51
Ccdc88a-202ENSMUST00000109477 Gm26620Q9CY65 116 aa11.81□□□□□ -0.52
Ccdc88a-202ENSMUST00000109477 Gm11939A2A592 99 aa11.77□□□□□ -0.53
Ccdc88a-202ENSMUST00000109477 Atox1O08997 68 aaKnown RBP11.76□□□□□ -0.53
Ccdc88a-202ENSMUST00000109477 Coa6Q8BGD8 79 aa11.74□□□□□ -0.53
Ccdc88a-202ENSMUST00000109477 Scgb1b2O35176 93 aa11.7□□□□□ -0.54
Ccdc88a-202ENSMUST00000109477 Spint4Q9D263 159 aa11.7□□□□□ -0.54
Ccdc88a-202ENSMUST00000109477 Gm18596A0A1W2P860 280 aa11.69□□□□□ -0.54
Ccdc88a-202ENSMUST00000109477 Gm5767A0A0J9YTU8 78 aa11.63□□□□□ -0.55
Ccdc88a-202ENSMUST00000109477 Gm28539A0A087WSL9 92 aa11.6□□□□□ -0.55
Ccdc88a-202ENSMUST00000109477 Gm5965D3Z724 196 aa11.58□□□□□ -0.56
Ccdc88a-202ENSMUST00000109477 Tmem258P61166 79 aa11.58□□□□□ -0.56
Ccdc88a-202ENSMUST00000109477 Chtf8P0CG14 533 aa11.57□□□□□ -0.56
Ccdc88a-202ENSMUST00000109477 Smlr1J3QMJ4 66 aa11.56□□□□□ -0.56
Ccdc88a-202ENSMUST00000109477 Krtap3-2Q9D638 99 aa11.53□□□□□ -0.56
Ccdc88a-202ENSMUST00000109477 Krtap3-3Q9D7P0 99 aa11.53□□□□□ -0.56
Ccdc88a-202ENSMUST00000109477 A930033H14RikG5E8X6 103 aa11.49□□□□□ -0.57
Ccdc88a-202ENSMUST00000109477 Gm19935A0A1B0GSF9 52 aa11.49□□□□□ -0.57
Ccdc88a-202ENSMUST00000109477 Gm10160F6Y577 67 aa11.49□□□□□ -0.57
Ccdc88a-202ENSMUST00000109477 Defb38Q7TNV7 63 aa11.49□□□□□ -0.57
Ccdc88a-202ENSMUST00000109477 SmcpP15265 143 aa11.46□□□□□ -0.57
Ccdc88a-202ENSMUST00000109477 Coa5Q99M07 74 aa11.44□□□□□ -0.58
Ccdc88a-202ENSMUST00000109477 Pet100P0DJE0 76 aa11.43□□□□□ -0.58
Ccdc88a-202ENSMUST00000109477 SnurfQ9WU12 71 aa11.42□□□□□ -0.58
Ccdc88a-202ENSMUST00000109477 Gm10999F6Q4M4 69 aa11.38□□□□□ -0.59
Ccdc88a-202ENSMUST00000109477 Krtap15-1Q9QZU5 150 aa11.36□□□□□ -0.59
Ccdc88a-202ENSMUST00000109477 Q8BGJ3 129 aa11.35□□□□□ -0.59
Ccdc88a-202ENSMUST00000109477 Gm4491E0CX42 125 aa11.35□□□□□ -0.59
Ccdc88a-202ENSMUST00000109477 Gm21798J3QNU5 87 aa11.35□□□□□ -0.59
Ccdc88a-202ENSMUST00000109477 Ush2AQ2QI47 5193 aa11.35□□□□□ -0.59
Ccdc88a-202ENSMUST00000109477 Gm9821Q8K076 103 aa11.32□□□□□ -0.6
Ccdc88a-202ENSMUST00000109477 Rpl37Q9D823 97 aa11.32□□□□□ -0.6
Ccdc88a-202ENSMUST00000109477 A0A1Y7VJH8 109 aa11.3□□□□□ -0.6
Ccdc88a-202ENSMUST00000109477 Smim20D3Z7Q2 69 aa11.3□□□□□ -0.6
Ccdc88a-202ENSMUST00000109477 Gm10643Q3URG9 111 aa11.29□□□□□ -0.6
Ccdc88a-202ENSMUST00000109477 Prm1P02319 51 aa11.27□□□□□ -0.61
Ccdc88a-202ENSMUST00000109477 2310034C09RikQ9D746 214 aa11.25□□□□□ -0.61
Ccdc88a-202ENSMUST00000109477 Serp1Q9Z1W5 66 aa11.22□□□□□ -0.61
Ccdc88a-202ENSMUST00000109477 Gm7735D3YX18 52 aa11.21□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 Cdc42se1Q8BHL7 80 aa11.21□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 Rps28P62858 69 aaKnown RBP11.2□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 Pcp4P63054 62 aa11.2□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 Gm9789Q8BIG3 52 aa11.2□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 Hmcn2A2AJ76 5100 aa11.2□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 Rnase13Q5GAM7 153 aa11.18□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 Brk1Q91VR8 75 aa11.18□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 2310079G19RikQ9D6L6 185 aa11.18□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 4930507D05RikQ8C9C9 103 aa11.17□□□□□ -0.62
Ccdc88a-202ENSMUST00000109477 Ubr4A2AN08 5180 aa11.08□□□□□ -0.64
Ccdc88a-202ENSMUST00000109477 9230102O04RikA2ASX7 82 aa11.06□□□□□ -0.64
Ccdc88a-202ENSMUST00000109477 Gm10197F6QEY5 67 aa11.04□□□□□ -0.64
Ccdc88a-202ENSMUST00000109477 4932415D10RikA0A1W2P6U8 4986 aa11.02□□□□□ -0.65
Ccdc88a-202ENSMUST00000109477 Gm20661K7N787 53 aa10.97□□□□□ -0.65
Ccdc88a-202ENSMUST00000109477 Sec61bQ9CQS8 96 aaKnown RBP10.95□□□□□ -0.66
Ccdc88a-202ENSMUST00000109477 Gm17416Q30KP4 66 aa10.94□□□□□ -0.66
Ccdc88a-202ENSMUST00000109477 Phxr4P15974 95 aa10.92□□□□□ -0.66
Ccdc88a-202ENSMUST00000109477 2310057N15RikQ9D6T8 200 aa10.92□□□□□ -0.66
Ccdc88a-202ENSMUST00000109477 Defb1P56386 69 aa10.92□□□□□ -0.66
Ccdc88a-202ENSMUST00000109477 H2al1aQ5M8Q2 105 aa10.89□□□□□ -0.67
Ccdc88a-202ENSMUST00000109477 H2al1eQ810S6 105 aa10.89□□□□□ -0.67
Ccdc88a-202ENSMUST00000109477 SptssbQ925E8 76 aa10.89□□□□□ -0.67
Ccdc88a-202ENSMUST00000109477 Krtap4-1Q3UUY3 169 aa10.86□□□□□ -0.67
Ccdc88a-202ENSMUST00000109477 Krtap28-10A0A1Y7VP58 119 aa10.83□□□□□ -0.68
Ccdc88a-202ENSMUST00000109477 H2al1bA0A087WP11 105 aa10.74□□□□□ -0.69
Ccdc88a-202ENSMUST00000109477 Krtap1-3A2A588 173 aa10.72□□□□□ -0.69
Retrieved 100 of 22,080 RNA–protein pairs in 47.4 ms