Protein–RNA interactions for Protein: A2AN08

Ubr4, E3 ubiquitin-protein ligase UBR4, mousemouse

Predictions only

Length 5,180 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4A2AN08 Gm25239-201ENSMUST00000174915 86 ntBASIC22.66■■□□□ 1.22
Ubr4A2AN08 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr4A2AN08 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ubr4A2AN08 Gm24109-201ENSMUST00000175489 103 ntBASIC20.07■□□□□ 0.8
Ubr4A2AN08 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ubr4A2AN08 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ubr4A2AN08 Gm15042-201ENSMUST00000120212 883 ntBASIC19■□□□□ 0.63
Ubr4A2AN08 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ubr4A2AN08 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ubr4A2AN08 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ubr4A2AN08 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC18.76■□□□□ 0.59
Ubr4A2AN08 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18.75■□□□□ 0.59
Ubr4A2AN08 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Ubr4A2AN08 Gm23366-201ENSMUST00000175022 89 ntBASIC18.61■□□□□ 0.57
Ubr4A2AN08 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ubr4A2AN08 Gm15045-201ENSMUST00000117359 883 ntBASIC18.43■□□□□ 0.54
Ubr4A2AN08 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC18.11■□□□□ 0.49
Ubr4A2AN08 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ubr4A2AN08 Gm25238-201ENSMUST00000174914 89 ntBASIC18.04■□□□□ 0.48
Ubr4A2AN08 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
Ubr4A2AN08 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ubr4A2AN08 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ubr4A2AN08 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Ubr4A2AN08 Gm25262-201ENSMUST00000174934 133 ntBASIC17.68■□□□□ 0.42
Ubr4A2AN08 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Ubr4A2AN08 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ubr4A2AN08 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Ubr4A2AN08 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Ubr4A2AN08 Gm26115-201ENSMUST00000175605 87 ntBASIC17.42■□□□□ 0.38
Ubr4A2AN08 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC17.41■□□□□ 0.38
Ubr4A2AN08 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC17.36■□□□□ 0.37
Ubr4A2AN08 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC17.28■□□□□ 0.36
Ubr4A2AN08 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubr4A2AN08 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ubr4A2AN08 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC17.17■□□□□ 0.34
Ubr4A2AN08 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC17.16■□□□□ 0.34
Ubr4A2AN08 Gm8109-201ENSMUST00000194076 746 ntBASIC17.15■□□□□ 0.34
Ubr4A2AN08 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC17.13■□□□□ 0.33
Ubr4A2AN08 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ubr4A2AN08 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC16.96■□□□□ 0.31
Ubr4A2AN08 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC16.91■□□□□ 0.3
Ubr4A2AN08 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubr4A2AN08 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC16.78■□□□□ 0.28
Ubr4A2AN08 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubr4A2AN08 Gm24804-201ENSMUST00000174982 85 ntBASIC16.73■□□□□ 0.27
Ubr4A2AN08 Rab21-202ENSMUST00000218831 843 ntBASIC16.72■□□□□ 0.27
Ubr4A2AN08 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ubr4A2AN08 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubr4A2AN08 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubr4A2AN08 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ubr4A2AN08 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC16.58■□□□□ 0.24
Ubr4A2AN08 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC16.56■□□□□ 0.24
Ubr4A2AN08 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC16.54■□□□□ 0.24
Ubr4A2AN08 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ubr4A2AN08 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ubr4A2AN08 Gm5987-201ENSMUST00000196433 1151 ntBASIC16.51■□□□□ 0.23
Ubr4A2AN08 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ubr4A2AN08 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ubr4A2AN08 Gm27325-201ENSMUST00000175467 74 ntBASIC16.42■□□□□ 0.22
Ubr4A2AN08 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC16.41■□□□□ 0.22
Ubr4A2AN08 Zfp131-205ENSMUST00000223812 663 ntBASIC16.4■□□□□ 0.22
Ubr4A2AN08 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ubr4A2AN08 Gm17082-201ENSMUST00000166043 1091 ntBASIC16.34■□□□□ 0.21
Ubr4A2AN08 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ubr4A2AN08 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ubr4A2AN08 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubr4A2AN08 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC16.29■□□□□ 0.2
Ubr4A2AN08 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubr4A2AN08 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ubr4A2AN08 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC16.26■□□□□ 0.19
Ubr4A2AN08 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC16.23■□□□□ 0.19
Ubr4A2AN08 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ubr4A2AN08 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ubr4A2AN08 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ubr4A2AN08 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Ubr4A2AN08 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubr4A2AN08 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubr4A2AN08 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ubr4A2AN08 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ubr4A2AN08 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC16.07■□□□□ 0.16
Ubr4A2AN08 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubr4A2AN08 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC16.05■□□□□ 0.16
Ubr4A2AN08 Gm15039-201ENSMUST00000118914 875 ntBASIC16.05■□□□□ 0.16
Ubr4A2AN08 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Ubr4A2AN08 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubr4A2AN08 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC16.02■□□□□ 0.16
Ubr4A2AN08 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC16.02■□□□□ 0.15
Ubr4A2AN08 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ubr4A2AN08 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ubr4A2AN08 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ubr4A2AN08 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Ubr4A2AN08 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC15.97■□□□□ 0.15
Ubr4A2AN08 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Ubr4A2AN08 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Ubr4A2AN08 Gm27322-201ENSMUST00000184007 104 ntBASIC15.93■□□□□ 0.14
Ubr4A2AN08 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Ubr4A2AN08 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ubr4A2AN08 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC15.87■□□□□ 0.13
Ubr4A2AN08 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC15.87■□□□□ 0.13
Ubr4A2AN08 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms