Protein–RNA interactions for Protein: Q8K353

Cystm1, Cysteine-rich and transmembrane domain-containing protein 1, mousemouse

Predictions only

Length 104 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cystm1Q8K353 Gm25239-201ENSMUST00000174915 86 ntBASIC21.49■■□□□ 1.03
Cystm1Q8K353 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cystm1Q8K353 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cystm1Q8K353 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cystm1Q8K353 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Cystm1Q8K353 Psd-208ENSMUST00000224556 2034 ntBASIC20.11■□□□□ 0.81
Cystm1Q8K353 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Cystm1Q8K353 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cystm1Q8K353 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cystm1Q8K353 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cystm1Q8K353 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cystm1Q8K353 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Cystm1Q8K353 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cystm1Q8K353 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cystm1Q8K353 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cystm1Q8K353 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cystm1Q8K353 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cystm1Q8K353 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cystm1Q8K353 Gm15042-201ENSMUST00000120212 883 ntBASIC18.83■□□□□ 0.6
Cystm1Q8K353 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cystm1Q8K353 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cystm1Q8K353 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cystm1Q8K353 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cystm1Q8K353 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cystm1Q8K353 Gm42596-201ENSMUST00000196305 1958 ntBASIC18.63■□□□□ 0.57
Cystm1Q8K353 Gm24109-201ENSMUST00000175489 103 ntBASIC18.59■□□□□ 0.57
Cystm1Q8K353 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cystm1Q8K353 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cystm1Q8K353 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cystm1Q8K353 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC18.43■□□□□ 0.54
Cystm1Q8K353 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Cystm1Q8K353 Gm15045-201ENSMUST00000117359 883 ntBASIC18.37■□□□□ 0.53
Cystm1Q8K353 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cystm1Q8K353 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cystm1Q8K353 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Cystm1Q8K353 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cystm1Q8K353 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cystm1Q8K353 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cystm1Q8K353 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cystm1Q8K353 Gm23366-201ENSMUST00000175022 89 ntBASIC18.03■□□□□ 0.48
Cystm1Q8K353 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Cystm1Q8K353 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cystm1Q8K353 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC17.92■□□□□ 0.46
Cystm1Q8K353 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cystm1Q8K353 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cystm1Q8K353 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cystm1Q8K353 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC17.88■□□□□ 0.45
Cystm1Q8K353 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC17.88■□□□□ 0.45
Cystm1Q8K353 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Cystm1Q8K353 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cystm1Q8K353 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cystm1Q8K353 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cystm1Q8K353 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cystm1Q8K353 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cystm1Q8K353 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cystm1Q8K353 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Cystm1Q8K353 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cystm1Q8K353 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cystm1Q8K353 Zxda-201ENSMUST00000117281 2621 ntBASIC17.7■□□□□ 0.42
Cystm1Q8K353 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cystm1Q8K353 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cystm1Q8K353 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cystm1Q8K353 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cystm1Q8K353 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cystm1Q8K353 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cystm1Q8K353 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cystm1Q8K353 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC17.46■□□□□ 0.39
Cystm1Q8K353 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Cystm1Q8K353 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Cystm1Q8K353 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cystm1Q8K353 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC17.39■□□□□ 0.37
Cystm1Q8K353 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cystm1Q8K353 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cystm1Q8K353 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cystm1Q8K353 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cystm1Q8K353 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cystm1Q8K353 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cystm1Q8K353 Gm10524-201ENSMUST00000181931 1893 ntBASIC17.32■□□□□ 0.36
Cystm1Q8K353 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Cystm1Q8K353 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cystm1Q8K353 AC153911.1-202ENSMUST00000218534 1034 ntBASIC17.29■□□□□ 0.36
Cystm1Q8K353 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cystm1Q8K353 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cystm1Q8K353 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cystm1Q8K353 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Cystm1Q8K353 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cystm1Q8K353 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cystm1Q8K353 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cystm1Q8K353 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cystm1Q8K353 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cystm1Q8K353 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
Cystm1Q8K353 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Cystm1Q8K353 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cystm1Q8K353 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC17.15■□□□□ 0.34
Cystm1Q8K353 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cystm1Q8K353 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Cystm1Q8K353 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cystm1Q8K353 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cystm1Q8K353 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cystm1Q8K353 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms