RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 ZNF608Q9ULD9 1512 aaPredicted RBP26.55■■□□□ 1.84
PCDHGC3-205ENST00000617641 P3H3Q8IVL6 736 aa26.53■■□□□ 1.84
PCDHGC3-205ENST00000617641 KANK4Q5T7N3 995 aaPredicted RBP26.51■■□□□ 1.84
PCDHGC3-205ENST00000617641 GRIN2BQ13224 1484 aa26.5■■□□□ 1.83
PCDHGC3-205ENST00000617641 EFCAB5A4FU69 1503 aa26.5■■□□□ 1.83
PCDHGC3-205ENST00000617641 ADAMTS12P58397 1594 aa26.49■■□□□ 1.83
PCDHGC3-205ENST00000617641 FHAD1B1AJZ9 1412 aa26.49■■□□□ 1.83
PCDHGC3-205ENST00000617641 FHOD3Q2V2M9 1422 aa26.48■■□□□ 1.83
PCDHGC3-205ENST00000617641 ZEB1P37275 1124 aaPredicted RBP26.46■■□□□ 1.83
PCDHGC3-205ENST00000617641 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.43■■□□□ 1.82
PCDHGC3-205ENST00000617641 EIF4G3O43432 1585 aaKnown RBP26.41■■□□□ 1.82
PCDHGC3-205ENST00000617641 PCF11O94913 1555 aaKnown RBP26.41■■□□□ 1.82
PCDHGC3-205ENST00000617641 TIAM1Q13009 1591 aa26.39■■□□□ 1.81
PCDHGC3-205ENST00000617641 SAMD9Q5K651 1589 aa26.37■■□□□ 1.81
PCDHGC3-205ENST00000617641 MAP3K1Q13233 1512 aa26.36■■□□□ 1.81
PCDHGC3-205ENST00000617641 HNRNPUL2Q1KMD3 747 aaKnown RBP26.35■■□□□ 1.81
PCDHGC3-205ENST00000617641 SNAPC4Q5SXM2 1469 aa26.34■■□□□ 1.81
PCDHGC3-205ENST00000617641 CCER1Q8TC90 406 aaPredicted RBP26.33■■□□□ 1.81
PCDHGC3-205ENST00000617641 FYCO1Q9BQS8 1478 aa26.31■■□□□ 1.8
PCDHGC3-205ENST00000617641 ATP1B4Q9UN42 357 aaPredicted RBP26.3■■□□□ 1.8
PCDHGC3-205ENST00000617641 CASKIN1Q8WXD9 1431 aa26.29■■□□□ 1.8
PCDHGC3-205ENST00000617641 CFAP43Q8NDM7 1665 aa26.29■■□□□ 1.8
PCDHGC3-205ENST00000617641 FMN1Q68DA7 1419 aa26.29■■□□□ 1.8
PCDHGC3-205ENST00000617641 IQGAP2Q13576 1575 aa26.29■■□□□ 1.8
PCDHGC3-205ENST00000617641 LRRC9Q6ZRR7 1453 aa26.27■■□□□ 1.8
PCDHGC3-205ENST00000617641 RRBP1Q9P2E9 1410 aaKnown RBP26.24■■□□□ 1.79
PCDHGC3-205ENST00000617641 GRIN2AQ12879 1464 aa26.21■■□□□ 1.79
PCDHGC3-205ENST00000617641 MAGI1Q96QZ7 1491 aaPredicted RBP26.21■■□□□ 1.79
PCDHGC3-205ENST00000617641 CCNB3Q8WWL7 1395 aa26.15■■□□□ 1.78
PCDHGC3-205ENST00000617641 KIAA0586Q9BVV6 1533 aa26.14■■□□□ 1.77
PCDHGC3-205ENST00000617641 UGGT2Q9NYU1 1516 aa26.13■■□□□ 1.77
PCDHGC3-205ENST00000617641 SYNJ2O15056 1496 aa26.13■■□□□ 1.77
PCDHGC3-205ENST00000617641 LRRIQ1Q96JM4 1722 aa26.12■■□□□ 1.77
PCDHGC3-205ENST00000617641 CHMP7Q8WUX9 453 aaPredicted RBP26.11■■□□□ 1.77
PCDHGC3-205ENST00000617641 PHLDB1Q86UU1 1377 aa26.1■■□□□ 1.77
PCDHGC3-205ENST00000617641 FBLN2P98095 1184 aa26.06■■□□□ 1.76
PCDHGC3-205ENST00000617641 CEP170Q5SW79 1584 aa26.06■■□□□ 1.76
PCDHGC3-205ENST00000617641 DISP1Q96F81 1524 aa26.02■■□□□ 1.76
PCDHGC3-205ENST00000617641 KIAA0556O60303 1618 aa26.02■■□□□ 1.76
PCDHGC3-205ENST00000617641 MTUS2Q5JR59 1369 aa25.99■■□□□ 1.75
PCDHGC3-205ENST00000617641 HECW1Q76N89 1606 aa25.98■■□□□ 1.75
PCDHGC3-205ENST00000617641 ITGAEP38570 1179 aa25.98■■□□□ 1.75
PCDHGC3-205ENST00000617641 NUP160Q12769 1436 aa25.97■■□□□ 1.75
PCDHGC3-205ENST00000617641 CCDC18Q5T9S5 1454 aa25.95■■□□□ 1.74
PCDHGC3-205ENST00000617641 FAM50AQ14320 339 aaKnown RBP25.91■■□□□ 1.74
PCDHGC3-205ENST00000617641 EPRSP07814 1512 aaKnown RBP25.9■■□□□ 1.74
PCDHGC3-205ENST00000617641 EHBP1L1Q8N3D4 1523 aa25.9■■□□□ 1.74
PCDHGC3-205ENST00000617641 MAGI3Q5TCQ9 1506 aa25.9■■□□□ 1.74
PCDHGC3-205ENST00000617641 CDK13Q14004 1512 aaKnown RBP25.88■■□□□ 1.73
PCDHGC3-205ENST00000617641 NCOA2Q15596 1464 aa25.87■■□□□ 1.73
PCDHGC3-205ENST00000617641 SUPT6HQ7KZ85 1726 aaKnown RBP25.86■■□□□ 1.73
PCDHGC3-205ENST00000617641 FGD6Q6ZV73 1430 aa25.85■■□□□ 1.73
PCDHGC3-205ENST00000617641 ARID3CA6NKF2 412 aa25.85■■□□□ 1.73
PCDHGC3-205ENST00000617641 JPH4Q96JJ6 628 aa25.85■■□□□ 1.73
PCDHGC3-205ENST00000617641 RAPGEF6Q8TEU7 1601 aa25.82■■□□□ 1.72
PCDHGC3-205ENST00000617641 DHX57Q6P158 1386 aaKnown RBP25.81■■□□□ 1.72
PCDHGC3-205ENST00000617641 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.8■■□□□ 1.72
PCDHGC3-205ENST00000617641 CARMIL2Q6F5E8 1435 aa25.79■■□□□ 1.72
PCDHGC3-205ENST00000617641 NUP153P49790 1475 aaKnown RBP25.79■■□□□ 1.72
PCDHGC3-205ENST00000617641 MYOM3Q5VTT5 1437 aa25.78■■□□□ 1.72
PCDHGC3-205ENST00000617641 CHD1O14646 1710 aa25.78■■□□□ 1.72
PCDHGC3-205ENST00000617641 ARHGEF11O15085 1522 aa25.78■■□□□ 1.72
PCDHGC3-205ENST00000617641 RAB3GAP2Q9H2M9 1393 aa25.75■■□□□ 1.71
PCDHGC3-205ENST00000617641 PLB1Q6P1J6 1458 aa25.73■■□□□ 1.71
PCDHGC3-205ENST00000617641 SETD5Q9C0A6 1442 aa25.72■■□□□ 1.71
PCDHGC3-205ENST00000617641 CLSPNQ9HAW4 1339 aa25.68■■□□□ 1.7
PCDHGC3-205ENST00000617641 PTPN23Q9H3S7 1636 aa25.67■■□□□ 1.7
PCDHGC3-205ENST00000617641 PRG4Q92954 1404 aaPredicted RBP25.64■■□□□ 1.7
PCDHGC3-205ENST00000617641 PTPRKQ15262 1439 aa25.62■■□□□ 1.69
PCDHGC3-205ENST00000617641 ABCA8O94911 1581 aa25.6■■□□□ 1.69
PCDHGC3-205ENST00000617641 CDK11AQ9UQ88 783 aaPredicted RBP25.59■■□□□ 1.69
PCDHGC3-205ENST00000617641 TCOF1Q13428 1488 aaKnown RBP25.59■■□□□ 1.69
PCDHGC3-205ENST00000617641 MIA2Q96PC5 1412 aa25.56■■□□□ 1.68
PCDHGC3-205ENST00000617641 SHROOM2Q13796 1616 aa25.55■■□□□ 1.68
PCDHGC3-205ENST00000617641 TROQ12816 1431 aaPredicted RBP25.55■■□□□ 1.68
PCDHGC3-205ENST00000617641 MAPKBP1O60336 1514 aa25.52■■□□□ 1.68
PCDHGC3-205ENST00000617641 PTPRGP23470 1445 aa25.52■■□□□ 1.68
PCDHGC3-205ENST00000617641 HFM1A2PYH4 1435 aa25.5■■□□□ 1.67
PCDHGC3-205ENST00000617641 ATP10BO94823 1461 aa25.48■■□□□ 1.67
PCDHGC3-205ENST00000617641 KIF14Q15058 1648 aa25.47■■□□□ 1.67
PCDHGC3-205ENST00000617641 ADCY10Q96PN6 1610 aa25.46■■□□□ 1.67
PCDHGC3-205ENST00000617641 NAIPQ13075 1403 aa25.46■■□□□ 1.67
PCDHGC3-205ENST00000617641 ERCC6L2Q5T890 1561 aa25.46■■□□□ 1.67
PCDHGC3-205ENST00000617641 CLASP1Q7Z460 1538 aa25.43■■□□□ 1.66
PCDHGC3-205ENST00000617641 CHIC2Q9UKJ5 165 aa25.42■■□□□ 1.66
PCDHGC3-205ENST00000617641 ZNF316A6NFI3 1004 aaPredicted RBP25.41■■□□□ 1.66
PCDHGC3-205ENST00000617641 ZNF644Q9H582 1327 aaPredicted RBP25.4■■□□□ 1.66
PCDHGC3-205ENST00000617641 PLEKHD1A6NEE1 506 aa25.4■■□□□ 1.66
PCDHGC3-205ENST00000617641 RRP7BPQ9NSQ0 103 aa25.38■■□□□ 1.65
PCDHGC3-205ENST00000617641 ITSN2Q9NZM3 1697 aa25.38■■□□□ 1.65
PCDHGC3-205ENST00000617641 GPATCH8Q9UKJ3 1502 aaKnown RBP25.37■■□□□ 1.65
PCDHGC3-205ENST00000617641 UACAQ9BZF9 1416 aa25.37■■□□□ 1.65
PCDHGC3-205ENST00000617641 GCC2Q8IWJ2 1684 aa25.36■■□□□ 1.65
PCDHGC3-205ENST00000617641 DAPK1P53355 1430 aa25.35■■□□□ 1.65
PCDHGC3-205ENST00000617641 DNMT1P26358 1616 aaKnown RBP25.35■■□□□ 1.65
PCDHGC3-205ENST00000617641 CFDP1Q9UEE9 299 aaPredicted RBP25.34■■□□□ 1.65
PCDHGC3-205ENST00000617641 AKNAQ7Z591 1439 aa25.34■■□□□ 1.65
PCDHGC3-205ENST00000617641 ABCC5O15440 1437 aa25.32■■□□□ 1.64
PCDHGC3-205ENST00000617641 CAMSAP2Q08AD1 1489 aa25.32■■□□□ 1.64
PCDHGC3-205ENST00000617641 ABCC10Q5T3U5 1492 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms