RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 NISCHQ9Y2I1 1504 aa38.36■■■■□ 3.73
PCDHGC3-205ENST00000617641 CCDC180Q9P1Z9 1646 aa33.18■■■□□ 2.9
PCDHGC3-205ENST00000617641 ZCCHC6Q5VYS8 1495 aaKnown RBP32.3■■■□□ 2.76
PCDHGC3-205ENST00000617641 SHROOM4Q9ULL8 1493 aa31.79■■■□□ 2.68
PCDHGC3-205ENST00000617641 DCAF8L2P0C7V8 631 aa31.75■■■□□ 2.67
PCDHGC3-205ENST00000617641 DCAF1Q9Y4B6 1507 aa31.61■■■□□ 2.65
PCDHGC3-205ENST00000617641 ABCC9O60706 1549 aa31.22■■■□□ 2.59
PCDHGC3-205ENST00000617641 MYO15BQ96JP2 1530 aa31.06■■■□□ 2.56
PCDHGC3-205ENST00000617641 NACADO15069 1562 aa30.83■■■□□ 2.53
PCDHGC3-205ENST00000617641 SUPT5HO00267 1087 aaKnown RBP30.75■■■□□ 2.51
PCDHGC3-205ENST00000617641 SCRIBQ14160 1630 aa30.75■■■□□ 2.51
PCDHGC3-205ENST00000617641 RB1CC1Q8TDY2 1594 aa30.5■■■□□ 2.47
PCDHGC3-205ENST00000617641 UNC13AQ9UPW8 1703 aa29.99■■■□□ 2.39
PCDHGC3-205ENST00000617641 RSF1Q96T23 1441 aaPredicted RBP29.95■■■□□ 2.39
PCDHGC3-205ENST00000617641 CECR2Q9BXF3 1484 aa29.87■■■□□ 2.37
PCDHGC3-205ENST00000617641 MROH2BQ7Z745 1585 aa29.72■■■□□ 2.35
PCDHGC3-205ENST00000617641 BICRAQ9NZM4 1560 aa29.64■■■□□ 2.34
PCDHGC3-205ENST00000617641 PABPN1Q86U42 306 aaKnown RBP eCLIP29.57■■■□□ 2.32
PCDHGC3-205ENST00000617641 CHIC1Q5VXU3 224 aa29.57■■■□□ 2.32
PCDHGC3-205ENST00000617641 BAZ1AQ9NRL2 1556 aaPredicted RBP29.56■■■□□ 2.32
PCDHGC3-205ENST00000617641 WIZO95785 1651 aa29.52■■■□□ 2.32
PCDHGC3-205ENST00000617641 SMARCA4P51532 1647 aa29.42■■■□□ 2.3
PCDHGC3-205ENST00000617641 TOP2AP11388 1531 aaKnown RBP29.13■■■□□ 2.25
PCDHGC3-205ENST00000617641 PEG3Q9GZU2 1588 aa28.97■■■□□ 2.23
PCDHGC3-205ENST00000617641 SMARCA2P51531 1590 aa28.91■■■□□ 2.22
PCDHGC3-205ENST00000617641 CCDC88BA6NC98 1476 aa28.9■■■□□ 2.22
PCDHGC3-205ENST00000617641 ATAD2BQ9ULI0 1458 aa28.84■■■□□ 2.21
PCDHGC3-205ENST00000617641 EIF4G1Q04637 1599 aaKnown RBP28.82■■■□□ 2.2
PCDHGC3-205ENST00000617641 TRIM41Q8WV44 630 aa28.8■■■□□ 2.2
PCDHGC3-205ENST00000617641 BAZ1BQ9UIG0 1483 aaKnown RBP28.71■■■□□ 2.19
PCDHGC3-205ENST00000617641 LOC105371045A0A1W2PR82 267 aa28.54■■■□□ 2.16
PCDHGC3-205ENST00000617641 ABCC8Q09428 1581 aa28.49■■■□□ 2.15
PCDHGC3-205ENST00000617641 NCAPD3P42695 1498 aa28.48■■■□□ 2.15
PCDHGC3-205ENST00000617641 HMGXB3Q12766 1538 aa28.46■■■□□ 2.15
PCDHGC3-205ENST00000617641 FAM9AQ8IZU1 332 aaPredicted RBP28.4■■■□□ 2.14
PCDHGC3-205ENST00000617641 CC2D2AQ9P2K1 1620 aa28.2■■■□□ 2.11
PCDHGC3-205ENST00000617641 WRNQ14191 1432 aaPredicted RBP eCLIP28.17■■■□□ 2.1
PCDHGC3-205ENST00000617641 EHMT2Q96KQ7 1210 aa28.09■■■□□ 2.09
PCDHGC3-205ENST00000617641 SYNJ1O43426 1573 aa28.08■■■□□ 2.09
PCDHGC3-205ENST00000617641 SOGA1O94964 1423 aa28.02■■■□□ 2.08
PCDHGC3-205ENST00000617641 CFTRP13569 1480 aa27.98■■■□□ 2.07
PCDHGC3-205ENST00000617641 RUSC2Q8N2Y8 1516 aa27.92■■■□□ 2.06
PCDHGC3-205ENST00000617641 EEA1Q15075 1411 aa27.88■■■□□ 2.05
PCDHGC3-205ENST00000617641 TOP2BQ02880 1626 aa27.87■■■□□ 2.05
PCDHGC3-205ENST00000617641 PRDM2Q13029 1718 aa27.83■■■□□ 2.05
PCDHGC3-205ENST00000617641 BIVM-ERCC5R4GMW8 1640 aa27.82■■■□□ 2.04
PCDHGC3-205ENST00000617641 CADPSQ9ULU8 1353 aa27.81■■■□□ 2.04
PCDHGC3-205ENST00000617641 CSRNP3Q8WYN3 585 aa27.8■■■□□ 2.04
PCDHGC3-205ENST00000617641 CUX1P39880 1505 aa27.76■■■□□ 2.03
PCDHGC3-205ENST00000617641 PCGF6Q9BYE7 350 aa27.63■■■□□ 2.01
PCDHGC3-205ENST00000617641 GOLGA3Q08378 1498 aa27.59■■■□□ 2.01
PCDHGC3-205ENST00000617641 TNIKQ9UKE5 1360 aa27.57■■■□□ 2
PCDHGC3-205ENST00000617641 KIF21BO75037 1637 aa27.55■■■□□ 2
PCDHGC3-205ENST00000617641 NESP48681 1621 aa27.55■■■□□ 2
PCDHGC3-205ENST00000617641 CEP164Q9UPV0 1460 aa27.55■■■□□ 2
PCDHGC3-205ENST00000617641 FANCD2Q9BXW9 1451 aa27.54■■■□□ 2
PCDHGC3-205ENST00000617641 UBTFP17480 764 aaKnown RBP27.53■■■□□ 2
PCDHGC3-205ENST00000617641 DNAJC5BQ9UF47 199 aa27.53■■■□□ 2
PCDHGC3-205ENST00000617641 CEP162Q5TB80 1403 aa27.51■■□□□ 1.99
PCDHGC3-205ENST00000617641 LAMC3Q9Y6N6 1575 aa27.44■■□□□ 1.98
PCDHGC3-205ENST00000617641 TRIM26Q12899 539 aaPredicted RBP27.43■■□□□ 1.98
PCDHGC3-205ENST00000617641 RAPGEF2Q9Y4G8 1499 aa27.41■■□□□ 1.98
PCDHGC3-205ENST00000617641 KIF27Q86VH2 1401 aa27.39■■□□□ 1.98
PCDHGC3-205ENST00000617641 FGD5Q6ZNL6 1462 aa27.38■■□□□ 1.97
PCDHGC3-205ENST00000617641 DNMBPQ6XZF7 1577 aa27.32■■□□□ 1.96
PCDHGC3-205ENST00000617641 PRXQ9BXM0 1461 aa27.31■■□□□ 1.96
PCDHGC3-205ENST00000617641 CUX2O14529 1486 aa27.29■■□□□ 1.96
PCDHGC3-205ENST00000617641 TOPBP1Q92547 1522 aa27.28■■□□□ 1.96
PCDHGC3-205ENST00000617641 ERICH3Q5RHP9 1530 aa27.27■■□□□ 1.96
PCDHGC3-205ENST00000617641 PPARGC1BQ86YN6 1023 aaKnown RBP27.24■■□□□ 1.95
PCDHGC3-205ENST00000617641 PDS5BQ9NTI5 1447 aa27.23■■□□□ 1.95
PCDHGC3-205ENST00000617641 CLIP1P30622 1438 aa27.2■■□□□ 1.94
PCDHGC3-205ENST00000617641 URB2Q14146 1524 aaKnown RBP27.19■■□□□ 1.94
PCDHGC3-205ENST00000617641 POLA1P09884 1462 aaPredicted RBP27.19■■□□□ 1.94
PCDHGC3-205ENST00000617641 KIF21AQ7Z4S6 1674 aa27.17■■□□□ 1.94
PCDHGC3-205ENST00000617641 RAD54L2Q9Y4B4 1467 aa27.16■■□□□ 1.94
PCDHGC3-205ENST00000617641 IGF1RP08069 1367 aa27.14■■□□□ 1.94
PCDHGC3-205ENST00000617641 ABCA10Q8WWZ4 1543 aa27.1■■□□□ 1.93
PCDHGC3-205ENST00000617641 HRCP23327 699 aa27.1■■□□□ 1.93
PCDHGC3-205ENST00000617641 RANGAP1P46060 587 aaPredicted RBP27.1■■□□□ 1.93
PCDHGC3-205ENST00000617641 CARMIL1Q5VZK9 1371 aa27.02■■□□□ 1.92
PCDHGC3-205ENST00000617641 VPS8Q8N3P4 1428 aa26.99■■□□□ 1.91
PCDHGC3-205ENST00000617641 WDR97A6NE52 1622 aa26.98■■□□□ 1.91
PCDHGC3-205ENST00000617641 TTBK1Q5TCY1 1321 aaPredicted RBP26.97■■□□□ 1.91
PCDHGC3-205ENST00000617641 ARAP1Q96P48 1450 aa26.9■■□□□ 1.9
PCDHGC3-205ENST00000617641 MRC2Q9UBG0 1479 aa26.88■■□□□ 1.89
PCDHGC3-205ENST00000617641 TDRD9Q8NDG6 1382 aaKnown RBP26.86■■□□□ 1.89
PCDHGC3-205ENST00000617641 ABCA5Q8WWZ7 1642 aa26.86■■□□□ 1.89
PCDHGC3-205ENST00000617641 CUL7Q14999 1698 aa26.84■■□□□ 1.89
PCDHGC3-205ENST00000617641 TARBP1Q13395 1621 aaKnown RBP26.83■■□□□ 1.89
PCDHGC3-205ENST00000617641 ARHGAP35Q9NRY4 1499 aa26.81■■□□□ 1.88
PCDHGC3-205ENST00000617641 GAPVD1Q14C86 1478 aa26.8■■□□□ 1.88
PCDHGC3-205ENST00000617641 APLP2Q06481 763 aa26.74■■□□□ 1.87
PCDHGC3-205ENST00000617641 WDR62O43379 1518 aa26.71■■□□□ 1.87
PCDHGC3-205ENST00000617641 ERCC6Q03468 1493 aa26.68■■□□□ 1.86
PCDHGC3-205ENST00000617641 CTTNBP2Q8WZ74 1663 aa26.64■■□□□ 1.85
PCDHGC3-205ENST00000617641 AQRO60306 1485 aaKnown RBP eCLIP26.62■■□□□ 1.85
PCDHGC3-205ENST00000617641 PBRM1Q86U86 1689 aa26.62■■□□□ 1.85
PCDHGC3-205ENST00000617641 IFT140Q96RY7 1462 aa26.59■■□□□ 1.85
PCDHGC3-205ENST00000617641 THOC2Q8NI27 1593 aaKnown RBP26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 211.1 ms