RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 ARHGAP35Q9NRY4 1499 aa21.77■■□□□ 1.08
SMPD4-219ENST00000491128 FHAD1B1AJZ9 1412 aa21.76■■□□□ 1.07
SMPD4-219ENST00000491128 TRIM26Q12899 539 aaPredicted RBP21.75■■□□□ 1.07
SMPD4-219ENST00000491128 VPS8Q8N3P4 1428 aa21.73■■□□□ 1.07
SMPD4-219ENST00000491128 CHMP7Q8WUX9 453 aaPredicted RBP21.73■■□□□ 1.07
SMPD4-219ENST00000491128 ADAMTS12P58397 1594 aa21.7■■□□□ 1.06
SMPD4-219ENST00000491128 ATP1B4Q9UN42 357 aaPredicted RBP21.68■■□□□ 1.06
SMPD4-219ENST00000491128 FHOD3Q2V2M9 1422 aa21.66■■□□□ 1.06
SMPD4-219ENST00000491128 APLP2Q06481 763 aa21.66■■□□□ 1.06
SMPD4-219ENST00000491128 GRIN2AQ12879 1464 aa21.59■■□□□ 1.05
SMPD4-219ENST00000491128 KANK4Q5T7N3 995 aaPredicted RBP21.59■■□□□ 1.05
SMPD4-219ENST00000491128 CTTNBP2Q8WZ74 1663 aa21.59■■□□□ 1.05
SMPD4-219ENST00000491128 MAGI1Q96QZ7 1491 aaPredicted RBP21.58■■□□□ 1.04
SMPD4-219ENST00000491128 SYNJ2O15056 1496 aa21.56■■□□□ 1.04
SMPD4-219ENST00000491128 ARID3CA6NKF2 412 aa21.49■■□□□ 1.03
SMPD4-219ENST00000491128 IQGAP2Q13576 1575 aa21.48■■□□□ 1.03
SMPD4-219ENST00000491128 CEP170Q5SW79 1584 aa21.47■■□□□ 1.03
SMPD4-219ENST00000491128 KIAA0586Q9BVV6 1533 aa21.45■■□□□ 1.02
SMPD4-219ENST00000491128 EFCAB5A4FU69 1503 aa21.44■■□□□ 1.02
SMPD4-219ENST00000491128 JPH4Q96JJ6 628 aa21.43■■□□□ 1.02
SMPD4-219ENST00000491128 PCF11O94913 1555 aaKnown RBP21.41■■□□□ 1.02
SMPD4-219ENST00000491128 SAMD9Q5K651 1589 aa21.4■■□□□ 1.02
SMPD4-219ENST00000491128 NUP160Q12769 1436 aa21.38■■□□□ 1.01
SMPD4-219ENST00000491128 FMN1Q68DA7 1419 aa21.36■■□□□ 1.01
SMPD4-219ENST00000491128 DISP1Q96F81 1524 aa21.35■■□□□ 1.01
SMPD4-219ENST00000491128 UGGT2Q9NYU1 1516 aa21.33■■□□□ 1.01
SMPD4-219ENST00000491128 CASKIN1Q8WXD9 1431 aa21.33■■□□□ 1
SMPD4-219ENST00000491128 HNRNPUL2Q1KMD3 747 aaKnown RBP21.33■■□□□ 1
SMPD4-219ENST00000491128 CHD1O14646 1710 aa21.31■■□□□ 1
SMPD4-219ENST00000491128 TIAM1Q13009 1591 aa21.28■■□□□ 1
SMPD4-219ENST00000491128 FYCO1Q9BQS8 1478 aa21.28■■□□□ 1
SMPD4-219ENST00000491128 KIAA0556O60303 1618 aa21.27■■□□□ 1
SMPD4-219ENST00000491128 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.25■□□□□ 0.99
SMPD4-219ENST00000491128 LRRC9Q6ZRR7 1453 aa21.25■□□□□ 0.99
SMPD4-219ENST00000491128 PRG4Q92954 1404 aaPredicted RBP21.24■□□□□ 0.99
SMPD4-219ENST00000491128 ITGAEP38570 1179 aa21.23■□□□□ 0.99
SMPD4-219ENST00000491128 CARMIL2Q6F5E8 1435 aa21.2■□□□□ 0.98
SMPD4-219ENST00000491128 PLB1Q6P1J6 1458 aa21.2■□□□□ 0.98
SMPD4-219ENST00000491128 MTUS2Q5JR59 1369 aa21.18■□□□□ 0.98
SMPD4-219ENST00000491128 PHLDB1Q86UU1 1377 aa21.18■□□□□ 0.98
SMPD4-219ENST00000491128 CDK13Q14004 1512 aaKnown RBP21.18■□□□□ 0.98
SMPD4-219ENST00000491128 LRRIQ1Q96JM4 1722 aa21.17■□□□□ 0.98
SMPD4-219ENST00000491128 MAP3K1Q13233 1512 aa21.15■□□□□ 0.98
SMPD4-219ENST00000491128 ERCC6L2Q5T890 1561 aa21.14■□□□□ 0.98
SMPD4-219ENST00000491128 HRCP23327 699 aa21.14■□□□□ 0.98
SMPD4-219ENST00000491128 EPRSP07814 1512 aaKnown RBP21.13■□□□□ 0.97
SMPD4-219ENST00000491128 CFAP43Q8NDM7 1665 aa21.13■□□□□ 0.97
SMPD4-219ENST00000491128 FAM50AQ14320 339 aaKnown RBP21.12■□□□□ 0.97
SMPD4-219ENST00000491128 MAGI3Q5TCQ9 1506 aa21.11■□□□□ 0.97
SMPD4-219ENST00000491128 NUP153P49790 1475 aaKnown RBP21.11■□□□□ 0.97
SMPD4-219ENST00000491128 PTPRGP23470 1445 aa21.1■□□□□ 0.97
SMPD4-219ENST00000491128 HECW1Q76N89 1606 aa21.08■□□□□ 0.97
SMPD4-219ENST00000491128 CCNB3Q8WWL7 1395 aa21.08■□□□□ 0.97
SMPD4-219ENST00000491128 RAPGEF6Q8TEU7 1601 aa21.05■□□□□ 0.96
SMPD4-219ENST00000491128 RRBP1Q9P2E9 1410 aaKnown RBP21.04■□□□□ 0.96
SMPD4-219ENST00000491128 OSCARQ8IYS5 282 aa21.04■□□□□ 0.96
SMPD4-219ENST00000491128 CCDC18Q5T9S5 1454 aa21.03■□□□□ 0.96
SMPD4-219ENST00000491128 CCER1Q8TC90 406 aaPredicted RBP21.02■□□□□ 0.96
SMPD4-219ENST00000491128 CLASP1Q7Z460 1538 aa21.02■□□□□ 0.96
SMPD4-219ENST00000491128 NCOA2Q15596 1464 aa21.01■□□□□ 0.95
SMPD4-219ENST00000491128 SHROOM2Q13796 1616 aa20.99■□□□□ 0.95
SMPD4-219ENST00000491128 CDK11AQ9UQ88 783 aaPredicted RBP20.95■□□□□ 0.94
SMPD4-219ENST00000491128 EHBP1L1Q8N3D4 1523 aa20.95■□□□□ 0.94
SMPD4-219ENST00000491128 ABCA8O94911 1581 aa20.94■□□□□ 0.94
SMPD4-219ENST00000491128 ATP10BO94823 1461 aa20.94■□□□□ 0.94
SMPD4-219ENST00000491128 FGD6Q6ZV73 1430 aa20.92■□□□□ 0.94
SMPD4-219ENST00000491128 UACAQ9BZF9 1416 aa20.92■□□□□ 0.94
SMPD4-219ENST00000491128 PLEKHD1A6NEE1 506 aa20.91■□□□□ 0.94
SMPD4-219ENST00000491128 MYOM3Q5VTT5 1437 aa20.89■□□□□ 0.94
SMPD4-219ENST00000491128 SUPT6HQ7KZ85 1726 aaKnown RBP20.89■□□□□ 0.93
SMPD4-219ENST00000491128 ZNF644Q9H582 1327 aaPredicted RBP20.88■□□□□ 0.93
SMPD4-219ENST00000491128 KCNH8Q96L42 1107 aa20.86■□□□□ 0.93
SMPD4-219ENST00000491128 ZNF777Q9ULD5 760 aaPredicted RBP20.86■□□□□ 0.93
SMPD4-219ENST00000491128 TROQ12816 1431 aaPredicted RBP20.85■□□□□ 0.93
SMPD4-219ENST00000491128 CHIC2Q9UKJ5 165 aa20.85■□□□□ 0.93
SMPD4-219ENST00000491128 ARHGEF11O15085 1522 aa20.84■□□□□ 0.93
SMPD4-219ENST00000491128 KIF14Q15058 1648 aa20.81■□□□□ 0.92
SMPD4-219ENST00000491128 PTPRKQ15262 1439 aa20.8■□□□□ 0.92
SMPD4-219ENST00000491128 CFDP1Q9UEE9 299 aaPredicted RBP20.79■□□□□ 0.92
SMPD4-219ENST00000491128 ABCC2Q92887 1545 aa20.77■□□□□ 0.92
SMPD4-219ENST00000491128 PTPN23Q9H3S7 1636 aa20.75■□□□□ 0.91
SMPD4-219ENST00000491128 RRP7BPQ9NSQ0 103 aa20.75■□□□□ 0.91
SMPD4-219ENST00000491128 RAB3GAP2Q9H2M9 1393 aa20.74■□□□□ 0.91
SMPD4-219ENST00000491128 GPATCH8Q9UKJ3 1502 aaKnown RBP20.72■□□□□ 0.91
SMPD4-219ENST00000491128 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.7■□□□□ 0.9
SMPD4-219ENST00000491128 ZEB1P37275 1124 aaPredicted RBP20.7■□□□□ 0.9
SMPD4-219ENST00000491128 CYB5RLQ6IPT4 315 aa20.69■□□□□ 0.9
SMPD4-219ENST00000491128 SETD5Q9C0A6 1442 aa20.68■□□□□ 0.9
SMPD4-219ENST00000491128 MIA2Q96PC5 1412 aa20.68■□□□□ 0.9
SMPD4-219ENST00000491128 ADCY10Q96PN6 1610 aa20.66■□□□□ 0.9
SMPD4-219ENST00000491128 DHX57Q6P158 1386 aaKnown RBP20.66■□□□□ 0.9
SMPD4-219ENST00000491128 ABCC10Q5T3U5 1492 aa20.66■□□□□ 0.9
SMPD4-219ENST00000491128 TCOF1Q13428 1488 aaKnown RBP20.65■□□□□ 0.9
SMPD4-219ENST00000491128 ZCCHC11Q5TAX3 1644 aaKnown RBP20.65■□□□□ 0.9
SMPD4-219ENST00000491128 KDM5BQ9UGL1 1544 aa20.64■□□□□ 0.89
SMPD4-219ENST00000491128 UHRF1BP1LA0JNW5 1464 aa20.64■□□□□ 0.89
SMPD4-219ENST00000491128 HNRNPMP52272 730 aaKnown RBP eCLIP20.64■□□□□ 0.89
SMPD4-219ENST00000491128 CAMSAP2Q08AD1 1489 aa20.61■□□□□ 0.89
SMPD4-219ENST00000491128 ABCC5O15440 1437 aa20.6■□□□□ 0.89
SMPD4-219ENST00000491128 NPM1P06748 294 aaKnown RBP eCLIP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms