RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 NISCHQ9Y2I1 1504 aa31.35■■■□□ 2.61
SMPD4-219ENST00000491128 CCDC180Q9P1Z9 1646 aa27.07■■□□□ 1.92
SMPD4-219ENST00000491128 DCAF8L2P0C7V8 631 aa26.45■■□□□ 1.82
SMPD4-219ENST00000491128 ZCCHC6Q5VYS8 1495 aaKnown RBP26.29■■□□□ 1.8
SMPD4-219ENST00000491128 ABCC9O60706 1549 aa26.14■■□□□ 1.77
SMPD4-219ENST00000491128 SHROOM4Q9ULL8 1493 aa26.06■■□□□ 1.76
SMPD4-219ENST00000491128 DCAF1Q9Y4B6 1507 aa25.67■■□□□ 1.7
SMPD4-219ENST00000491128 MYO15BQ96JP2 1530 aa25.33■■□□□ 1.64
SMPD4-219ENST00000491128 NACADO15069 1562 aa25.32■■□□□ 1.64
SMPD4-219ENST00000491128 SCRIBQ14160 1630 aa25.29■■□□□ 1.64
SMPD4-219ENST00000491128 RB1CC1Q8TDY2 1594 aa25.16■■□□□ 1.62
SMPD4-219ENST00000491128 SUPT5HO00267 1087 aaKnown RBP25.06■■□□□ 1.6
SMPD4-219ENST00000491128 PABPN1Q86U42 306 aaKnown RBP eCLIP24.83■■□□□ 1.562e-6■■□□□ 12.8
SMPD4-219ENST00000491128 UNC13AQ9UPW8 1703 aa24.68■■□□□ 1.54
SMPD4-219ENST00000491128 CECR2Q9BXF3 1484 aa24.58■■□□□ 1.52
SMPD4-219ENST00000491128 BICRAQ9NZM4 1560 aa24.51■■□□□ 1.51
SMPD4-219ENST00000491128 RSF1Q96T23 1441 aaPredicted RBP24.42■■□□□ 1.5
SMPD4-219ENST00000491128 MROH2BQ7Z745 1585 aa24.34■■□□□ 1.49
SMPD4-219ENST00000491128 BAZ1AQ9NRL2 1556 aaPredicted RBP24.14■■□□□ 1.46
SMPD4-219ENST00000491128 WIZO95785 1651 aa24.13■■□□□ 1.45
SMPD4-219ENST00000491128 SMARCA4P51532 1647 aa24.07■■□□□ 1.44
SMPD4-219ENST00000491128 CHIC1Q5VXU3 224 aa23.79■■□□□ 1.4
SMPD4-219ENST00000491128 EIF4G1Q04637 1599 aaKnown RBP23.78■■□□□ 1.4
SMPD4-219ENST00000491128 ATAD2BQ9ULI0 1458 aa23.76■■□□□ 1.39
SMPD4-219ENST00000491128 TOP2AP11388 1531 aaKnown RBP23.72■■□□□ 1.39
SMPD4-219ENST00000491128 CCDC88BA6NC98 1476 aa23.64■■□□□ 1.38
SMPD4-219ENST00000491128 PEG3Q9GZU2 1588 aa23.64■■□□□ 1.37
SMPD4-219ENST00000491128 BAZ1BQ9UIG0 1483 aaKnown RBP23.63■■□□□ 1.37
SMPD4-219ENST00000491128 SMARCA2P51531 1590 aa23.6■■□□□ 1.37
SMPD4-219ENST00000491128 NCAPD3P42695 1498 aa23.47■■□□□ 1.35
SMPD4-219ENST00000491128 CC2D2AQ9P2K1 1620 aa23.47■■□□□ 1.35
SMPD4-219ENST00000491128 TRIM41Q8WV44 630 aa23.39■■□□□ 1.34
SMPD4-219ENST00000491128 HMGXB3Q12766 1538 aa23.34■■□□□ 1.33
SMPD4-219ENST00000491128 DNAJC5BQ9UF47 199 aa23.33■■□□□ 1.33
SMPD4-219ENST00000491128 ABCC8Q09428 1581 aa23.24■■□□□ 1.31
SMPD4-219ENST00000491128 FAM9AQ8IZU1 332 aaPredicted RBP23.21■■□□□ 1.31
SMPD4-219ENST00000491128 LOC105371045A0A1W2PR82 267 aa23.1■■□□□ 1.29
SMPD4-219ENST00000491128 EHMT2Q96KQ7 1210 aa23.1■■□□□ 1.29
SMPD4-219ENST00000491128 CFTRP13569 1480 aa22.99■■□□□ 1.27
SMPD4-219ENST00000491128 WRNQ14191 1432 aaPredicted RBP eCLIP22.98■■□□□ 1.27
SMPD4-219ENST00000491128 CADPSQ9ULU8 1353 aa22.98■■□□□ 1.27
SMPD4-219ENST00000491128 NESP48681 1621 aa22.95■■□□□ 1.26
SMPD4-219ENST00000491128 SYNJ1O43426 1573 aa22.88■■□□□ 1.25
SMPD4-219ENST00000491128 SOGA1O94964 1423 aa22.84■■□□□ 1.25
SMPD4-219ENST00000491128 RUSC2Q8N2Y8 1516 aa22.79■■□□□ 1.24
SMPD4-219ENST00000491128 FANCD2Q9BXW9 1451 aa22.74■■□□□ 1.23
SMPD4-219ENST00000491128 CUX1P39880 1505 aa22.72■■□□□ 1.23
SMPD4-219ENST00000491128 TOP2BQ02880 1626 aa22.65■■□□□ 1.22
SMPD4-219ENST00000491128 CSRNP3Q8WYN3 585 aa22.6■■□□□ 1.21
SMPD4-219ENST00000491128 LAMC3Q9Y6N6 1575 aa22.6■■□□□ 1.21
SMPD4-219ENST00000491128 PRDM2Q13029 1718 aa22.6■■□□□ 1.21
SMPD4-219ENST00000491128 BIVM-ERCC5R4GMW8 1640 aa22.56■■□□□ 1.2
SMPD4-219ENST00000491128 PDS5BQ9NTI5 1447 aa22.55■■□□□ 1.2
SMPD4-219ENST00000491128 CEP164Q9UPV0 1460 aa22.54■■□□□ 1.2
SMPD4-219ENST00000491128 FGD5Q6ZNL6 1462 aa22.5■■□□□ 1.19
SMPD4-219ENST00000491128 URB2Q14146 1524 aaKnown RBP22.47■■□□□ 1.19
SMPD4-219ENST00000491128 KIF21AQ7Z4S6 1674 aa22.46■■□□□ 1.19
SMPD4-219ENST00000491128 TOPBP1Q92547 1522 aa22.46■■□□□ 1.19
SMPD4-219ENST00000491128 UBTFP17480 764 aaKnown RBP22.45■■□□□ 1.18
SMPD4-219ENST00000491128 RAD54L2Q9Y4B4 1467 aa22.44■■□□□ 1.18
SMPD4-219ENST00000491128 EEA1Q15075 1411 aa22.43■■□□□ 1.18
SMPD4-219ENST00000491128 DNMBPQ6XZF7 1577 aa22.39■■□□□ 1.18
SMPD4-219ENST00000491128 CUX2O14529 1486 aa22.39■■□□□ 1.18
SMPD4-219ENST00000491128 POLA1P09884 1462 aaPredicted RBP22.38■■□□□ 1.17
SMPD4-219ENST00000491128 RANGAP1P46060 587 aaPredicted RBP22.38■■□□□ 1.17
SMPD4-219ENST00000491128 KIF27Q86VH2 1401 aa22.35■■□□□ 1.17
SMPD4-219ENST00000491128 ERCC6Q03468 1493 aa22.33■■□□□ 1.17
SMPD4-219ENST00000491128 RAPGEF2Q9Y4G8 1499 aa22.31■■□□□ 1.16
SMPD4-219ENST00000491128 TDRD9Q8NDG6 1382 aaKnown RBP22.28■■□□□ 1.16
SMPD4-219ENST00000491128 GOLGA3Q08378 1498 aa22.26■■□□□ 1.15
SMPD4-219ENST00000491128 MRC2Q9UBG0 1479 aa22.25■■□□□ 1.15
SMPD4-219ENST00000491128 IGF1RP08069 1367 aa22.25■■□□□ 1.15
SMPD4-219ENST00000491128 TNIKQ9UKE5 1360 aa22.2■■□□□ 1.15
SMPD4-219ENST00000491128 PPARGC1BQ86YN6 1023 aaKnown RBP22.18■■□□□ 1.14
SMPD4-219ENST00000491128 CEP162Q5TB80 1403 aa22.18■■□□□ 1.14
SMPD4-219ENST00000491128 ABCA10Q8WWZ4 1543 aa22.18■■□□□ 1.14
SMPD4-219ENST00000491128 PRXQ9BXM0 1461 aa22.18■■□□□ 1.14
SMPD4-219ENST00000491128 KIF21BO75037 1637 aa22.16■■□□□ 1.14
SMPD4-219ENST00000491128 CARMIL1Q5VZK9 1371 aa22.13■■□□□ 1.13
SMPD4-219ENST00000491128 AQRO60306 1485 aaKnown RBP eCLIP22.11■■□□□ 1.136e-7■■■■□ 25.6
SMPD4-219ENST00000491128 WDR62O43379 1518 aa22.07■■□□□ 1.12
SMPD4-219ENST00000491128 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
SMPD4-219ENST00000491128 GAPVD1Q14C86 1478 aa22.05■■□□□ 1.12
SMPD4-219ENST00000491128 TARBP1Q13395 1621 aaKnown RBP22.05■■□□□ 1.12
SMPD4-219ENST00000491128 TTBK1Q5TCY1 1321 aaPredicted RBP22.04■■□□□ 1.12
SMPD4-219ENST00000491128 THOC2Q8NI27 1593 aaKnown RBP22.03■■□□□ 1.12
SMPD4-219ENST00000491128 CLIP1P30622 1438 aa22.01■■□□□ 1.11
SMPD4-219ENST00000491128 WDR97A6NE52 1622 aa22■■□□□ 1.11
SMPD4-219ENST00000491128 ERICH3Q5RHP9 1530 aa22■■□□□ 1.11
SMPD4-219ENST00000491128 PCGF6Q9BYE7 350 aa21.98■■□□□ 1.11
SMPD4-219ENST00000491128 ABCA5Q8WWZ7 1642 aa21.96■■□□□ 1.11
SMPD4-219ENST00000491128 IFT140Q96RY7 1462 aa21.95■■□□□ 1.1
SMPD4-219ENST00000491128 P3H3Q8IVL6 736 aa21.91■■□□□ 1.1
SMPD4-219ENST00000491128 FBLN2P98095 1184 aa21.84■■□□□ 1.09
SMPD4-219ENST00000491128 GRIN2BQ13224 1484 aa21.83■■□□□ 1.08
SMPD4-219ENST00000491128 CUL7Q14999 1698 aa21.81■■□□□ 1.08
SMPD4-219ENST00000491128 EIF4G3O43432 1585 aaKnown RBP21.8■■□□□ 1.08
SMPD4-219ENST00000491128 ARAP1Q96P48 1450 aa21.79■■□□□ 1.08
SMPD4-219ENST00000491128 PBRM1Q86U86 1689 aa21.78■■□□□ 1.08
SMPD4-219ENST00000491128 SNAPC4Q5SXM2 1469 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms