RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 VPS8Q8N3P4 1428 aa14.84□□□□□ -0.03
VPS52-216ENST00000471309 ARAP1Q96P48 1450 aa14.84□□□□□ -0.03
VPS52-216ENST00000471309 EFCAB5A4FU69 1503 aa14.84□□□□□ -0.03
VPS52-216ENST00000471309 ARHGAP35Q9NRY4 1499 aa14.83□□□□□ -0.03
VPS52-216ENST00000471309 SYNJ2O15056 1496 aa14.81□□□□□ -0.04
VPS52-216ENST00000471309 GRIN2AQ12879 1464 aa14.8□□□□□ -0.04
VPS52-216ENST00000471309 SAMD9Q5K651 1589 aa14.78□□□□□ -0.04
VPS52-216ENST00000471309 IQGAP2Q13576 1575 aa14.77□□□□□ -0.04
VPS52-216ENST00000471309 RANGAP1P46060 587 aaPredicted RBP14.74□□□□□ -0.05
VPS52-216ENST00000471309 CEP170Q5SW79 1584 aa14.72□□□□□ -0.05
VPS52-216ENST00000471309 KIAA0586Q9BVV6 1533 aa14.71□□□□□ -0.05
VPS52-216ENST00000471309 UGGT2Q9NYU1 1516 aa14.71□□□□□ -0.06
VPS52-216ENST00000471309 NUP160Q12769 1436 aa14.7□□□□□ -0.06
VPS52-216ENST00000471309 CHD1O14646 1710 aa14.68□□□□□ -0.06
VPS52-216ENST00000471309 PCF11O94913 1555 aaKnown RBP14.67□□□□□ -0.06
VPS52-216ENST00000471309 FHOD3Q2V2M9 1422 aa14.66□□□□□ -0.06
VPS52-216ENST00000471309 CHMP7Q8WUX9 453 aaPredicted RBP14.66□□□□□ -0.06
VPS52-216ENST00000471309 FYCO1Q9BQS8 1478 aa14.64□□□□□ -0.07
VPS52-216ENST00000471309 KIAA0556O60303 1618 aa14.64□□□□□ -0.07
VPS52-216ENST00000471309 TRIM26Q12899 539 aaPredicted RBP14.64□□□□□ -0.07
VPS52-216ENST00000471309 MAP3K1Q13233 1512 aa14.64□□□□□ -0.07
VPS52-216ENST00000471309 FMN1Q68DA7 1419 aa14.64□□□□□ -0.07
VPS52-216ENST00000471309 CFAP43Q8NDM7 1665 aa14.64□□□□□ -0.07
VPS52-216ENST00000471309 TIAM1Q13009 1591 aa14.61□□□□□ -0.07
VPS52-216ENST00000471309 CASKIN1Q8WXD9 1431 aa14.61□□□□□ -0.07
VPS52-216ENST00000471309 DISP1Q96F81 1524 aa14.61□□□□□ -0.07
VPS52-216ENST00000471309 APLP2Q06481 763 aa14.59□□□□□ -0.07
VPS52-216ENST00000471309 FBLN2P98095 1184 aa14.57□□□□□ -0.08
VPS52-216ENST00000471309 PCGF6Q9BYE7 350 aa14.57□□□□□ -0.08
VPS52-216ENST00000471309 P3H3Q8IVL6 736 aa14.56□□□□□ -0.08
VPS52-216ENST00000471309 SHROOM2Q13796 1616 aa14.55□□□□□ -0.08
VPS52-216ENST00000471309 HECW1Q76N89 1606 aa14.55□□□□□ -0.08
VPS52-216ENST00000471309 PPARGC1BQ86YN6 1023 aaKnown RBP14.55□□□□□ -0.08
VPS52-216ENST00000471309 LRRIQ1Q96JM4 1722 aa14.53□□□□□ -0.08
VPS52-216ENST00000471309 CLASP1Q7Z460 1538 aa14.52□□□□□ -0.08
VPS52-216ENST00000471309 CARMIL2Q6F5E8 1435 aa14.51□□□□□ -0.09
VPS52-216ENST00000471309 CCDC18Q5T9S5 1454 aa14.5□□□□□ -0.09
VPS52-216ENST00000471309 LRRC9Q6ZRR7 1453 aa14.5□□□□□ -0.09
VPS52-216ENST00000471309 RAPGEF6Q8TEU7 1601 aa14.48□□□□□ -0.09
VPS52-216ENST00000471309 TTBK1Q5TCY1 1321 aaPredicted RBP14.46□□□□□ -0.09
VPS52-216ENST00000471309 KANK4Q5T7N3 995 aaPredicted RBP14.46□□□□□ -0.09
VPS52-216ENST00000471309 JPH4Q96JJ6 628 aa14.46□□□□□ -0.09
VPS52-216ENST00000471309 PRG4Q92954 1404 aaPredicted RBP14.44□□□□□ -0.1
VPS52-216ENST00000471309 EPRSP07814 1512 aaKnown RBP14.44□□□□□ -0.1
VPS52-216ENST00000471309 EHBP1L1Q8N3D4 1523 aa14.44□□□□□ -0.1
VPS52-216ENST00000471309 NUP153P49790 1475 aaKnown RBP14.42□□□□□ -0.1
VPS52-216ENST00000471309 ABCA8O94911 1581 aa14.42□□□□□ -0.1
VPS52-216ENST00000471309 RRBP1Q9P2E9 1410 aaKnown RBP14.41□□□□□ -0.1
VPS52-216ENST00000471309 ATP1B4Q9UN42 357 aaPredicted RBP14.39□□□□□ -0.11
VPS52-216ENST00000471309 CDK13Q14004 1512 aaKnown RBP14.39□□□□□ -0.11
VPS52-216ENST00000471309 SUPT6HQ7KZ85 1726 aaKnown RBP14.38□□□□□ -0.11
VPS52-216ENST00000471309 MAGI3Q5TCQ9 1506 aa14.38□□□□□ -0.11
VPS52-216ENST00000471309 PLB1Q6P1J6 1458 aa14.38□□□□□ -0.11
VPS52-216ENST00000471309 ERCC6L2Q5T890 1561 aa14.36□□□□□ -0.11
VPS52-216ENST00000471309 ARHGEF11O15085 1522 aa14.36□□□□□ -0.11
VPS52-216ENST00000471309 MTUS2Q5JR59 1369 aa14.35□□□□□ -0.11
VPS52-216ENST00000471309 PHLDB1Q86UU1 1377 aa14.34□□□□□ -0.11
VPS52-216ENST00000471309 PTPRGP23470 1445 aa14.33□□□□□ -0.11
VPS52-216ENST00000471309 NCOA2Q15596 1464 aa14.32□□□□□ -0.12
VPS52-216ENST00000471309 CCNB3Q8WWL7 1395 aa14.32□□□□□ -0.12
VPS52-216ENST00000471309 ADCY10Q96PN6 1610 aa14.3□□□□□ -0.12
VPS52-216ENST00000471309 ABCC2Q92887 1545 aa14.3□□□□□ -0.12
VPS52-216ENST00000471309 UACAQ9BZF9 1416 aa14.29□□□□□ -0.12
VPS52-216ENST00000471309 MYOM3Q5VTT5 1437 aa14.27□□□□□ -0.12
VPS52-216ENST00000471309 UHRF1BP1LA0JNW5 1464 aa14.26□□□□□ -0.13
VPS52-216ENST00000471309 TROQ12816 1431 aaPredicted RBP14.26□□□□□ -0.13
VPS52-216ENST00000471309 FGD6Q6ZV73 1430 aa14.26□□□□□ -0.13
VPS52-216ENST00000471309 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.26□□□□□ -0.13
VPS52-216ENST00000471309 ATP10BO94823 1461 aa14.25□□□□□ -0.13
VPS52-216ENST00000471309 OSCARQ8IYS5 282 aa14.25□□□□□ -0.13
VPS52-216ENST00000471309 CDK11AQ9UQ88 783 aaPredicted RBP14.25□□□□□ -0.13
VPS52-216ENST00000471309 ITSN2Q9NZM3 1697 aa14.23□□□□□ -0.13
VPS52-216ENST00000471309 KIF14Q15058 1648 aa14.23□□□□□ -0.13
VPS52-216ENST00000471309 PTPN23Q9H3S7 1636 aa14.22□□□□□ -0.13
VPS52-216ENST00000471309 TCOF1Q13428 1488 aaKnown RBP14.21□□□□□ -0.13
VPS52-216ENST00000471309 ARID3CA6NKF2 412 aa14.21□□□□□ -0.13
VPS52-216ENST00000471309 ZCCHC11Q5TAX3 1644 aaKnown RBP14.2□□□□□ -0.14
VPS52-216ENST00000471309 MIA2Q96PC5 1412 aa14.2□□□□□ -0.14
VPS52-216ENST00000471309 KDM5BQ9UGL1 1544 aa14.19□□□□□ -0.14
VPS52-216ENST00000471309 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.18□□□□□ -0.14
VPS52-216ENST00000471309 HRCP23327 699 aa14.18□□□□□ -0.14
VPS52-216ENST00000471309 HNRNPUL2Q1KMD3 747 aaKnown RBP14.18□□□□□ -0.14
VPS52-216ENST00000471309 ABCC10Q5T3U5 1492 aa14.15□□□□□ -0.14
VPS52-216ENST00000471309 CDC42BPAQ5VT25 1732 aa14.15□□□□□ -0.14
VPS52-216ENST00000471309 PLEKHD1A6NEE1 506 aa14.14□□□□□ -0.15
VPS52-216ENST00000471309 FAM50AQ14320 339 aaKnown RBP14.13□□□□□ -0.15
VPS52-216ENST00000471309 GPATCH8Q9UKJ3 1502 aaKnown RBP14.13□□□□□ -0.15
VPS52-216ENST00000471309 PREX2Q70Z35 1606 aa14.12□□□□□ -0.15
VPS52-216ENST00000471309 DNMT1P26358 1616 aaKnown RBP14.1□□□□□ -0.15
VPS52-216ENST00000471309 TTC37Q6PGP7 1564 aa14.09□□□□□ -0.15
VPS52-216ENST00000471309 CAMSAP2Q08AD1 1489 aa14.08□□□□□ -0.16
VPS52-216ENST00000471309 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.08□□□□□ -0.16
VPS52-216ENST00000471309 CROCC2H7BZ55 1655 aa14.07□□□□□ -0.16
VPS52-216ENST00000471309 MYO5CQ9NQX4 1742 aa14.07□□□□□ -0.16
VPS52-216ENST00000471309 ZEB1P37275 1124 aaPredicted RBP14.07□□□□□ -0.16
VPS52-216ENST00000471309 GCC2Q8IWJ2 1684 aa14.07□□□□□ -0.16
VPS52-216ENST00000471309 AKNAQ7Z591 1439 aa14.07□□□□□ -0.16
VPS52-216ENST00000471309 ITGAEP38570 1179 aa14.06□□□□□ -0.16
VPS52-216ENST00000471309 CDC42BPBQ9Y5S2 1711 aa14.06□□□□□ -0.16
VPS52-216ENST00000471309 PTPRKQ15262 1439 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms