RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 NISCHQ9Y2I1 1504 aa21.52■■□□□ 1.04
VPS52-216ENST00000471309 CCDC180Q9P1Z9 1646 aa18.89■□□□□ 0.62
VPS52-216ENST00000471309 ZCCHC6Q5VYS8 1495 aaKnown RBP18.11■□□□□ 0.49
VPS52-216ENST00000471309 DCAF1Q9Y4B6 1507 aa17.87■□□□□ 0.45
VPS52-216ENST00000471309 ABCC9O60706 1549 aa17.72■□□□□ 0.43
VPS52-216ENST00000471309 MYO15BQ96JP2 1530 aa17.67■□□□□ 0.42
VPS52-216ENST00000471309 DCAF8L2P0C7V8 631 aa17.55■□□□□ 0.4
VPS52-216ENST00000471309 NACADO15069 1562 aa17.54■□□□□ 0.4
VPS52-216ENST00000471309 RB1CC1Q8TDY2 1594 aa17.4■□□□□ 0.38
VPS52-216ENST00000471309 SHROOM4Q9ULL8 1493 aa17.37■□□□□ 0.37
VPS52-216ENST00000471309 SCRIBQ14160 1630 aa17.25■□□□□ 0.35
VPS52-216ENST00000471309 UNC13AQ9UPW8 1703 aa17.05■□□□□ 0.32
VPS52-216ENST00000471309 BICRAQ9NZM4 1560 aa16.85■□□□□ 0.29
VPS52-216ENST00000471309 AEBP2Q6ZN18 517 aaPredicted RBP16.78■□□□□ 0.28
VPS52-216ENST00000471309 CHIC1Q5VXU3 224 aa16.7■□□□□ 0.26
VPS52-216ENST00000471309 SUPT5HO00267 1087 aaKnown RBP16.66■□□□□ 0.26
VPS52-216ENST00000471309 CECR2Q9BXF3 1484 aa16.66■□□□□ 0.26
VPS52-216ENST00000471309 BAZ1AQ9NRL2 1556 aaPredicted RBP16.64■□□□□ 0.25
VPS52-216ENST00000471309 RSF1Q96T23 1441 aaPredicted RBP16.64■□□□□ 0.25
VPS52-216ENST00000471309 PABPN1Q86U42 306 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS52-216ENST00000471309 MROH2BQ7Z745 1585 aa16.6■□□□□ 0.25
VPS52-216ENST00000471309 SMARCA4P51532 1647 aa16.58■□□□□ 0.24
VPS52-216ENST00000471309 WIZO95785 1651 aa16.47■□□□□ 0.23
VPS52-216ENST00000471309 PEG3Q9GZU2 1588 aa16.42■□□□□ 0.22
VPS52-216ENST00000471309 TOP2AP11388 1531 aaKnown RBP16.35■□□□□ 0.21
VPS52-216ENST00000471309 EIF4G1Q04637 1599 aaKnown RBP16.34■□□□□ 0.21
VPS52-216ENST00000471309 SMARCA2P51531 1590 aa16.3■□□□□ 0.2
VPS52-216ENST00000471309 ATAD2BQ9ULI0 1458 aa16.27■□□□□ 0.19
VPS52-216ENST00000471309 DNAJC5BQ9UF47 199 aa16.19■□□□□ 0.18
VPS52-216ENST00000471309 HMGXB3Q12766 1538 aa16.19■□□□□ 0.18
VPS52-216ENST00000471309 BAZ1BQ9UIG0 1483 aaKnown RBP16.18■□□□□ 0.18
VPS52-216ENST00000471309 NCAPD3P42695 1498 aa16.16■□□□□ 0.18
VPS52-216ENST00000471309 CCDC88BA6NC98 1476 aa16.1■□□□□ 0.17
VPS52-216ENST00000471309 CC2D2AQ9P2K1 1620 aa16.09■□□□□ 0.17
VPS52-216ENST00000471309 PRDM2Q13029 1718 aa15.81■□□□□ 0.12
VPS52-216ENST00000471309 CFTRP13569 1480 aa15.78■□□□□ 0.12
VPS52-216ENST00000471309 ABCC8Q09428 1581 aa15.76■□□□□ 0.11
VPS52-216ENST00000471309 TRIM41Q8WV44 630 aa15.72■□□□□ 0.11
VPS52-216ENST00000471309 CADPSQ9ULU8 1353 aa15.69■□□□□ 0.1
VPS52-216ENST00000471309 WRNQ14191 1432 aaPredicted RBP eCLIP15.68■□□□□ 0.1
VPS52-216ENST00000471309 LAMC3Q9Y6N6 1575 aa15.65■□□□□ 0.1
VPS52-216ENST00000471309 SYNJ1O43426 1573 aa15.64■□□□□ 0.09
VPS52-216ENST00000471309 BIVM-ERCC5R4GMW8 1640 aa15.62■□□□□ 0.09
VPS52-216ENST00000471309 TOP2BQ02880 1626 aa15.61■□□□□ 0.09
VPS52-216ENST00000471309 NESP48681 1621 aa15.55■□□□□ 0.08
VPS52-216ENST00000471309 FANCD2Q9BXW9 1451 aa15.54■□□□□ 0.08
VPS52-216ENST00000471309 CUX1P39880 1505 aa15.53■□□□□ 0.08
VPS52-216ENST00000471309 EEA1Q15075 1411 aa15.47■□□□□ 0.07
VPS52-216ENST00000471309 CEP164Q9UPV0 1460 aa15.46■□□□□ 0.07
VPS52-216ENST00000471309 PDS5BQ9NTI5 1447 aa15.46■□□□□ 0.07
VPS52-216ENST00000471309 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
VPS52-216ENST00000471309 KIF21AQ7Z4S6 1674 aa15.44■□□□□ 0.06
VPS52-216ENST00000471309 SOGA1O94964 1423 aa15.42■□□□□ 0.06
VPS52-216ENST00000471309 TOPBP1Q92547 1522 aa15.38■□□□□ 0.05
VPS52-216ENST00000471309 FAM9AQ8IZU1 332 aaPredicted RBP15.37■□□□□ 0.05
VPS52-216ENST00000471309 FGD5Q6ZNL6 1462 aa15.37■□□□□ 0.05
VPS52-216ENST00000471309 URB2Q14146 1524 aaKnown RBP15.36■□□□□ 0.05
VPS52-216ENST00000471309 RUSC2Q8N2Y8 1516 aa15.36■□□□□ 0.05
VPS52-216ENST00000471309 KIF21BO75037 1637 aa15.31■□□□□ 0.04
VPS52-216ENST00000471309 POLA1P09884 1462 aaPredicted RBP15.3■□□□□ 0.04
VPS52-216ENST00000471309 MRC2Q9UBG0 1479 aa15.3■□□□□ 0.04
VPS52-216ENST00000471309 LOC105371045A0A1W2PR82 267 aa15.29■□□□□ 0.04
VPS52-216ENST00000471309 WDR97A6NE52 1622 aa15.28■□□□□ 0.04
VPS52-216ENST00000471309 KIF27Q86VH2 1401 aa15.28■□□□□ 0.04
VPS52-216ENST00000471309 CSRNP3Q8WYN3 585 aa15.27■□□□□ 0.04
VPS52-216ENST00000471309 WDR62O43379 1518 aa15.26■□□□□ 0.03
VPS52-216ENST00000471309 ABCA10Q8WWZ4 1543 aa15.25■□□□□ 0.03
VPS52-216ENST00000471309 CUX2O14529 1486 aa15.24■□□□□ 0.03
VPS52-216ENST00000471309 GOLGA3Q08378 1498 aa15.24■□□□□ 0.03
VPS52-216ENST00000471309 THOC2Q8NI27 1593 aaKnown RBP15.23■□□□□ 0.03
VPS52-216ENST00000471309 ERCC6Q03468 1493 aa15.21■□□□□ 0.03
VPS52-216ENST00000471309 ERICH3Q5RHP9 1530 aa15.21■□□□□ 0.03
VPS52-216ENST00000471309 RAD54L2Q9Y4B4 1467 aa15.2■□□□□ 0.02
VPS52-216ENST00000471309 TARBP1Q13395 1621 aaKnown RBP15.19■□□□□ 0.02
VPS52-216ENST00000471309 PRXQ9BXM0 1461 aa15.19■□□□□ 0.02
VPS52-216ENST00000471309 ABCA5Q8WWZ7 1642 aa15.17■□□□□ 0.02
VPS52-216ENST00000471309 DNAJC5Q9H3Z4 198 aa15.15■□□□□ 0.02
VPS52-216ENST00000471309 TNIKQ9UKE5 1360 aa15.14■□□□□ 0.01
VPS52-216ENST00000471309 RAPGEF2Q9Y4G8 1499 aa15.14■□□□□ 0.01
VPS52-216ENST00000471309 CUL7Q14999 1698 aa15.12■□□□□ 0.01
VPS52-216ENST00000471309 IFT140Q96RY7 1462 aa15.1■□□□□ 0.01
VPS52-216ENST00000471309 IGF1RP08069 1367 aa15.1■□□□□ 0.01
VPS52-216ENST00000471309 EHMT2Q96KQ7 1210 aa15.09■□□□□ 0.01
VPS52-216ENST00000471309 CEP162Q5TB80 1403 aa15.07■□□□□ 0
VPS52-216ENST00000471309 GAPVD1Q14C86 1478 aa15.07■□□□□ 0
VPS52-216ENST00000471309 PBRM1Q86U86 1689 aa15.06■□□□□ 0
VPS52-216ENST00000471309 TDRD9Q8NDG6 1382 aaKnown RBP15.03■□□□□ -0
VPS52-216ENST00000471309 UBTFP17480 764 aaKnown RBP15.03■□□□□ -0
VPS52-216ENST00000471309 CARMIL1Q5VZK9 1371 aa15.02■□□□□ -0
VPS52-216ENST00000471309 EIF4G3O43432 1585 aaKnown RBP15.01□□□□□ -0.01
VPS52-216ENST00000471309 ADAMTS12P58397 1594 aa14.98□□□□□ -0.01
VPS52-216ENST00000471309 GRIN2BQ13224 1484 aa14.97□□□□□ -0.01
VPS52-216ENST00000471309 ZNF608Q9ULD9 1512 aaPredicted RBP14.97□□□□□ -0.01
VPS52-216ENST00000471309 CLIP1P30622 1438 aa14.95□□□□□ -0.02
VPS52-216ENST00000471309 CTTNBP2Q8WZ74 1663 aa14.95□□□□□ -0.02
VPS52-216ENST00000471309 AQRO60306 1485 aaKnown RBP eCLIP14.95□□□□□ -0.024e-8■■■■■ 33.6
VPS52-216ENST00000471309 FHAD1B1AJZ9 1412 aa14.92□□□□□ -0.02
VPS52-216ENST00000471309 MAGI1Q96QZ7 1491 aaPredicted RBP14.88□□□□□ -0.03
VPS52-216ENST00000471309 SNAPC4Q5SXM2 1469 aa14.87□□□□□ -0.03
VPS52-216ENST00000471309 PHF23Q9BUL5 403 aaPredicted RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms