RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.49■■■□□ 2.63
USP39-203ENST00000409470 KANK4Q5T7N3 995 aaPredicted RBP31.49■■■□□ 2.63
USP39-203ENST00000409470 EFCAB5A4FU69 1503 aa31.48■■■□□ 2.63
USP39-203ENST00000409470 P3H3Q8IVL6 736 aa31.48■■■□□ 2.63
USP39-203ENST00000409470 FHAD1B1AJZ9 1412 aa31.45■■■□□ 2.63
USP39-203ENST00000409470 CCER1Q8TC90 406 aaPredicted RBP31.45■■■□□ 2.63
USP39-203ENST00000409470 GRIN2BQ13224 1484 aa31.42■■■□□ 2.62
USP39-203ENST00000409470 FHOD3Q2V2M9 1422 aa31.41■■■□□ 2.62
USP39-203ENST00000409470 ZNF608Q9ULD9 1512 aaPredicted RBP31.39■■■□□ 2.62
USP39-203ENST00000409470 THOC2Q8NI27 1593 aaKnown RBP31.39■■■□□ 2.62
USP39-203ENST00000409470 HNRNPUL2Q1KMD3 747 aaKnown RBP31.37■■■□□ 2.61
USP39-203ENST00000409470 ADAMTS12P58397 1594 aa31.37■■■□□ 2.61
USP39-203ENST00000409470 MAP3K1Q13233 1512 aa31.35■■■□□ 2.61
USP39-203ENST00000409470 TIAM1Q13009 1591 aa31.34■■■□□ 2.61
USP39-203ENST00000409470 PCF11O94913 1555 aaKnown RBP31.33■■■□□ 2.61
USP39-203ENST00000409470 ATP1B4Q9UN42 357 aaPredicted RBP31.28■■■□□ 2.6
USP39-203ENST00000409470 SAMD9Q5K651 1589 aa31.27■■■□□ 2.6
USP39-203ENST00000409470 FYCO1Q9BQS8 1478 aa31.25■■■□□ 2.59
USP39-203ENST00000409470 EIF4G3O43432 1585 aaKnown RBP31.25■■■□□ 2.59
USP39-203ENST00000409470 FMN1Q68DA7 1419 aa31.25■■■□□ 2.59
USP39-203ENST00000409470 CASKIN1Q8WXD9 1431 aa31.24■■■□□ 2.59
USP39-203ENST00000409470 LRRC9Q6ZRR7 1453 aa31.21■■■□□ 2.59
USP39-203ENST00000409470 CFAP43Q8NDM7 1665 aa31.21■■■□□ 2.59
USP39-203ENST00000409470 RRBP1Q9P2E9 1410 aaKnown RBP31.2■■■□□ 2.58
USP39-203ENST00000409470 SNAPC4Q5SXM2 1469 aa31.19■■■□□ 2.58
USP39-203ENST00000409470 IQGAP2Q13576 1575 aa31.16■■■□□ 2.58
USP39-203ENST00000409470 CCNB3Q8WWL7 1395 aa31.11■■■□□ 2.57
USP39-203ENST00000409470 MAGI1Q96QZ7 1491 aaPredicted RBP31.06■■■□□ 2.56
USP39-203ENST00000409470 GRIN2AQ12879 1464 aa31.06■■■□□ 2.56
USP39-203ENST00000409470 KIAA0586Q9BVV6 1533 aa31■■■□□ 2.55
USP39-203ENST00000409470 PHLDB1Q86UU1 1377 aa30.99■■■□□ 2.55
USP39-203ENST00000409470 UGGT2Q9NYU1 1516 aa30.98■■■□□ 2.55
USP39-203ENST00000409470 CHMP7Q8WUX9 453 aaPredicted RBP30.98■■■□□ 2.55
USP39-203ENST00000409470 SYNJ2O15056 1496 aa30.97■■■□□ 2.55
USP39-203ENST00000409470 LRRIQ1Q96JM4 1722 aa30.92■■■□□ 2.54
USP39-203ENST00000409470 ITGAEP38570 1179 aa30.91■■■□□ 2.54
USP39-203ENST00000409470 FBLN2P98095 1184 aa30.91■■■□□ 2.54
USP39-203ENST00000409470 MTUS2Q5JR59 1369 aa30.91■■■□□ 2.54
USP39-203ENST00000409470 HECW1Q76N89 1606 aa30.85■■■□□ 2.53
USP39-203ENST00000409470 FAM50AQ14320 339 aaKnown RBP30.84■■■□□ 2.53
USP39-203ENST00000409470 CCDC18Q5T9S5 1454 aa30.84■■■□□ 2.53
USP39-203ENST00000409470 CEP170Q5SW79 1584 aa30.84■■■□□ 2.53
USP39-203ENST00000409470 KIAA0556O60303 1618 aa30.83■■■□□ 2.53
USP39-203ENST00000409470 DISP1Q96F81 1524 aa30.82■■■□□ 2.52
USP39-203ENST00000409470 EHBP1L1Q8N3D4 1523 aa30.77■■■□□ 2.52
USP39-203ENST00000409470 NUP160Q12769 1436 aa30.75■■■□□ 2.51
USP39-203ENST00000409470 EPRSP07814 1512 aaKnown RBP30.74■■■□□ 2.51
USP39-203ENST00000409470 SUPT6HQ7KZ85 1726 aaKnown RBP30.73■■■□□ 2.51
USP39-203ENST00000409470 NCOA2Q15596 1464 aa30.72■■■□□ 2.51
USP39-203ENST00000409470 DHX57Q6P158 1386 aaKnown RBP30.72■■■□□ 2.51
USP39-203ENST00000409470 FGD6Q6ZV73 1430 aa30.71■■■□□ 2.51
USP39-203ENST00000409470 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.7■■■□□ 2.511e-6■□□□□ 11
USP39-203ENST00000409470 MAGI3Q5TCQ9 1506 aa30.68■■■□□ 2.5
USP39-203ENST00000409470 CDK13Q14004 1512 aaKnown RBP30.67■■■□□ 2.5
USP39-203ENST00000409470 CLSPNQ9HAW4 1339 aa30.66■■■□□ 2.5
USP39-203ENST00000409470 JPH4Q96JJ6 628 aa30.65■■■□□ 2.5
USP39-203ENST00000409470 ARID3CA6NKF2 412 aa30.64■■■□□ 2.5
USP39-203ENST00000409470 MYOM3Q5VTT5 1437 aa30.64■■■□□ 2.49
USP39-203ENST00000409470 CARMIL2Q6F5E8 1435 aa30.64■■■□□ 2.49
USP39-203ENST00000409470 RAB3GAP2Q9H2M9 1393 aa30.63■■■□□ 2.49
USP39-203ENST00000409470 SETD5Q9C0A6 1442 aa30.62■■■□□ 2.49
USP39-203ENST00000409470 RAPGEF6Q8TEU7 1601 aa30.61■■■□□ 2.49
USP39-203ENST00000409470 ARHGEF11O15085 1522 aa30.58■■■□□ 2.49
USP39-203ENST00000409470 NUP153P49790 1475 aaKnown RBP30.57■■■□□ 2.48
USP39-203ENST00000409470 PTPN23Q9H3S7 1636 aa30.49■■■□□ 2.47
USP39-203ENST00000409470 PLB1Q6P1J6 1458 aa30.48■■■□□ 2.47
USP39-203ENST00000409470 CHD1O14646 1710 aa30.48■■■□□ 2.47
USP39-203ENST00000409470 CDK11AQ9UQ88 783 aaPredicted RBP30.47■■■□□ 2.47
USP39-203ENST00000409470 PTPRKQ15262 1439 aa30.4■■■□□ 2.46
USP39-203ENST00000409470 TCOF1Q13428 1488 aaKnown RBP30.4■■■□□ 2.46
USP39-203ENST00000409470 PRG4Q92954 1404 aaPredicted RBP30.39■■■□□ 2.46
USP39-203ENST00000409470 MIA2Q96PC5 1412 aa30.39■■■□□ 2.46
USP39-203ENST00000409470 ZNF316A6NFI3 1004 aaPredicted RBP30.35■■■□□ 2.45
USP39-203ENST00000409470 HFM1A2PYH4 1435 aa30.33■■■□□ 2.45
USP39-203ENST00000409470 ABCA8O94911 1581 aa30.33■■■□□ 2.45
USP39-203ENST00000409470 TROQ12816 1431 aaPredicted RBP30.33■■■□□ 2.45
USP39-203ENST00000409470 MAPKBP1O60336 1514 aa30.32■■■□□ 2.44
USP39-203ENST00000409470 PTPRGP23470 1445 aa30.27■■■□□ 2.44
USP39-203ENST00000409470 NAIPQ13075 1403 aa30.25■■■□□ 2.43
USP39-203ENST00000409470 DIEXFQ68CQ4 756 aaKnown RBP30.24■■■□□ 2.43
USP39-203ENST00000409470 SHROOM2Q13796 1616 aa30.23■■■□□ 2.43
USP39-203ENST00000409470 CHIC2Q9UKJ5 165 aa30.21■■■□□ 2.43
USP39-203ENST00000409470 ATP10BO94823 1461 aa30.2■■■□□ 2.43
USP39-203ENST00000409470 ADCY10Q96PN6 1610 aa30.19■■■□□ 2.42
USP39-203ENST00000409470 PLEKHD1A6NEE1 506 aa30.19■■■□□ 2.42
USP39-203ENST00000409470 RRP7BPQ9NSQ0 103 aa30.17■■■□□ 2.42
USP39-203ENST00000409470 KIF14Q15058 1648 aa30.17■■■□□ 2.42
USP39-203ENST00000409470 ITSN2Q9NZM3 1697 aa30.15■■■□□ 2.42
USP39-203ENST00000409470 UACAQ9BZF9 1416 aa30.14■■■□□ 2.42
USP39-203ENST00000409470 AKNAQ7Z591 1439 aa30.13■■■□□ 2.41
USP39-203ENST00000409470 ZNF644Q9H582 1327 aaPredicted RBP30.12■■■□□ 2.41
USP39-203ENST00000409470 CFDP1Q9UEE9 299 aaPredicted RBP30.12■■■□□ 2.41
USP39-203ENST00000409470 GCC2Q8IWJ2 1684 aa30.12■■■□□ 2.41
USP39-203ENST00000409470 DAPK1P53355 1430 aa30.11■■■□□ 2.41
USP39-203ENST00000409470 GPATCH8Q9UKJ3 1502 aaKnown RBP30.11■■■□□ 2.41
USP39-203ENST00000409470 DNMT1P26358 1616 aaKnown RBP30.09■■■□□ 2.41
USP39-203ENST00000409470 SIN3AQ96ST3 1273 aa30.09■■■□□ 2.41
USP39-203ENST00000409470 NEUROD1Q13562 356 aa30.08■■■□□ 2.41
USP39-203ENST00000409470 CLASP1Q7Z460 1538 aa30.07■■■□□ 2.4
USP39-203ENST00000409470 ERCC6L2Q5T890 1561 aa30.07■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms