RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 NISCHQ9Y2I1 1504 aa45.48■■■■■ 4.87
USP39-203ENST00000409470 CCDC180Q9P1Z9 1646 aa39.31■■■■□ 3.88
USP39-203ENST00000409470 ZCCHC6Q5VYS8 1495 aaKnown RBP38.29■■■■□ 3.72
USP39-203ENST00000409470 SHROOM4Q9ULL8 1493 aa37.72■■■■□ 3.63
USP39-203ENST00000409470 DCAF8L2P0C7V8 631 aa37.68■■■■□ 3.62
USP39-203ENST00000409470 DCAF1Q9Y4B6 1507 aa37.49■■■■□ 3.59
USP39-203ENST00000409470 ABCC9O60706 1549 aa36.92■■■■□ 3.5
USP39-203ENST00000409470 MYO15BQ96JP2 1530 aa36.82■■■■□ 3.49
USP39-203ENST00000409470 SUPT5HO00267 1087 aaKnown RBP36.57■■■■□ 3.44
USP39-203ENST00000409470 NACADO15069 1562 aa36.53■■■■□ 3.44
USP39-203ENST00000409470 SCRIBQ14160 1630 aa36.4■■■■□ 3.42
USP39-203ENST00000409470 RB1CC1Q8TDY2 1594 aa36.12■■■■□ 3.37
USP39-203ENST00000409470 RSF1Q96T23 1441 aaPredicted RBP35.53■■■■□ 3.28
USP39-203ENST00000409470 UNC13AQ9UPW8 1703 aa35.42■■■■□ 3.26
USP39-203ENST00000409470 CECR2Q9BXF3 1484 aa35.37■■■■□ 3.25
USP39-203ENST00000409470 MROH2BQ7Z745 1585 aa35.21■■■■□ 3.23
USP39-203ENST00000409470 CHIC1Q5VXU3 224 aa35.18■■■■□ 3.22
USP39-203ENST00000409470 BAZ1AQ9NRL2 1556 aaPredicted RBP35.06■■■■□ 3.2
USP39-203ENST00000409470 BICRAQ9NZM4 1560 aa35.03■■■■□ 3.2
USP39-203ENST00000409470 PABPN1Q86U42 306 aaKnown RBP eCLIP34.99■■■■□ 3.19
USP39-203ENST00000409470 WIZO95785 1651 aa34.96■■■■□ 3.19
USP39-203ENST00000409470 SMARCA4P51532 1647 aa34.85■■■■□ 3.17
USP39-203ENST00000409470 TOP2AP11388 1531 aaKnown RBP34.54■■■■□ 3.12
USP39-203ENST00000409470 PEG3Q9GZU2 1588 aa34.32■■■■□ 3.08
USP39-203ENST00000409470 TRIM41Q8WV44 630 aa34.28■■■■□ 3.08
USP39-203ENST00000409470 CCDC88BA6NC98 1476 aa34.26■■■■□ 3.08
USP39-203ENST00000409470 SMARCA2P51531 1590 aa34.26■■■■□ 3.07
USP39-203ENST00000409470 ATAD2BQ9ULI0 1458 aa34.16■■■■□ 3.06
USP39-203ENST00000409470 EIF4G1Q04637 1599 aaKnown RBP34.13■■■■□ 3.05
USP39-203ENST00000409470 BAZ1BQ9UIG0 1483 aaKnown RBP34.03■■■■□ 3.04
USP39-203ENST00000409470 LOC105371045A0A1W2PR82 267 aa33.95■■■■□ 3.03
USP39-203ENST00000409470 FAM9AQ8IZU1 332 aaPredicted RBP33.77■■■■□ 3
USP39-203ENST00000409470 ABCC8Q09428 1581 aa33.76■■■■□ 3
USP39-203ENST00000409470 NCAPD3P42695 1498 aa33.73■■■□□ 2.99
USP39-203ENST00000409470 HMGXB3Q12766 1538 aa33.71■■■□□ 2.99
USP39-203ENST00000409470 WRNQ14191 1432 aaPredicted RBP eCLIP33.44■■■□□ 2.94
USP39-203ENST00000409470 EHMT2Q96KQ7 1210 aa33.37■■■□□ 2.93
USP39-203ENST00000409470 CC2D2AQ9P2K1 1620 aa33.34■■■□□ 2.93
USP39-203ENST00000409470 SYNJ1O43426 1573 aa33.27■■■□□ 2.92
USP39-203ENST00000409470 SOGA1O94964 1423 aa33.25■■■□□ 2.91
USP39-203ENST00000409470 EEA1Q15075 1411 aa33.18■■■□□ 2.9
USP39-203ENST00000409470 CFTRP13569 1480 aa33.15■■■□□ 2.9
USP39-203ENST00000409470 RUSC2Q8N2Y8 1516 aa33.1■■■□□ 2.89
USP39-203ENST00000409470 CSRNP3Q8WYN3 585 aa33.06■■■□□ 2.88
USP39-203ENST00000409470 TOP2BQ02880 1626 aa33.05■■■□□ 2.88
USP39-203ENST00000409470 BIVM-ERCC5R4GMW8 1640 aa32.98■■■□□ 2.87
USP39-203ENST00000409470 PCGF6Q9BYE7 350 aa32.98■■■□□ 2.87
USP39-203ENST00000409470 CADPSQ9ULU8 1353 aa32.96■■■□□ 2.87
USP39-203ENST00000409470 PRDM2Q13029 1718 aa32.96■■■□□ 2.87
USP39-203ENST00000409470 CUX1P39880 1505 aa32.87■■■□□ 2.85
USP39-203ENST00000409470 GOLGA3Q08378 1498 aa32.81■■■□□ 2.84
USP39-203ENST00000409470 TNIKQ9UKE5 1360 aa32.8■■■□□ 2.84
USP39-203ENST00000409470 UBTFP17480 764 aaKnown RBP32.77■■■□□ 2.84
USP39-203ENST00000409470 TRIM26Q12899 539 aaPredicted RBP32.75■■■□□ 2.83
USP39-203ENST00000409470 CEP164Q9UPV0 1460 aa32.74■■■□□ 2.83
USP39-203ENST00000409470 KIF21BO75037 1637 aa32.72■■■□□ 2.83
USP39-203ENST00000409470 CEP162Q5TB80 1403 aa32.71■■■□□ 2.83
USP39-203ENST00000409470 FANCD2Q9BXW9 1451 aa32.62■■■□□ 2.81
USP39-203ENST00000409470 NESP48681 1621 aa32.57■■■□□ 2.8
USP39-203ENST00000409470 KIF27Q86VH2 1401 aa32.54■■■□□ 2.8
USP39-203ENST00000409470 RAPGEF2Q9Y4G8 1499 aa32.52■■■□□ 2.8
USP39-203ENST00000409470 LAMC3Q9Y6N6 1575 aa32.49■■■□□ 2.79
USP39-203ENST00000409470 DNAJC5BQ9UF47 199 aa32.45■■■□□ 2.79
USP39-203ENST00000409470 FGD5Q6ZNL6 1462 aa32.45■■■□□ 2.79
USP39-203ENST00000409470 PRXQ9BXM0 1461 aa32.42■■■□□ 2.78
USP39-203ENST00000409470 ERICH3Q5RHP9 1530 aa32.4■■■□□ 2.78
USP39-203ENST00000409470 PPARGC1BQ86YN6 1023 aaKnown RBP32.39■■■□□ 2.78
USP39-203ENST00000409470 HRCP23327 699 aa32.39■■■□□ 2.78
USP39-203ENST00000409470 DNMBPQ6XZF7 1577 aa32.38■■■□□ 2.77
USP39-203ENST00000409470 CUX2O14529 1486 aa32.37■■■□□ 2.77
USP39-203ENST00000409470 CLIP1P30622 1438 aa32.34■■■□□ 2.77
USP39-203ENST00000409470 TOPBP1Q92547 1522 aa32.31■■■□□ 2.76
USP39-203ENST00000409470 PDS5BQ9NTI5 1447 aa32.29■■■□□ 2.76
USP39-203ENST00000409470 IGF1RP08069 1367 aa32.2■■■□□ 2.75
USP39-203ENST00000409470 POLA1P09884 1462 aaPredicted RBP32.2■■■□□ 2.75
USP39-203ENST00000409470 RANGAP1P46060 587 aaPredicted RBP32.19■■■□□ 2.74
USP39-203ENST00000409470 URB2Q14146 1524 aaKnown RBP32.17■■■□□ 2.74
USP39-203ENST00000409470 RAD54L2Q9Y4B4 1467 aa32.16■■■□□ 2.74
USP39-203ENST00000409470 ABCA10Q8WWZ4 1543 aa32.12■■■□□ 2.73
USP39-203ENST00000409470 KIF21AQ7Z4S6 1674 aa32.12■■■□□ 2.73
USP39-203ENST00000409470 VPS8Q8N3P4 1428 aa32.09■■■□□ 2.73
USP39-203ENST00000409470 CARMIL1Q5VZK9 1371 aa32.07■■■□□ 2.72
USP39-203ENST00000409470 TTBK1Q5TCY1 1321 aaPredicted RBP32.07■■■□□ 2.72
USP39-203ENST00000409470 WDR97A6NE52 1622 aa31.93■■■□□ 2.7
USP39-203ENST00000409470 APLP2Q06481 763 aa31.92■■■□□ 2.7
USP39-203ENST00000409470 ARAP1Q96P48 1450 aa31.92■■■□□ 2.7
USP39-203ENST00000409470 CUL7Q14999 1698 aa31.84■■■□□ 2.69
USP39-203ENST00000409470 MRC2Q9UBG0 1479 aa31.83■■■□□ 2.69
USP39-203ENST00000409470 TDRD9Q8NDG6 1382 aaKnown RBP31.83■■■□□ 2.69
USP39-203ENST00000409470 ARHGAP35Q9NRY4 1499 aa31.82■■■□□ 2.68
USP39-203ENST00000409470 ABCA5Q8WWZ7 1642 aa31.8■■■□□ 2.68
USP39-203ENST00000409470 GAPVD1Q14C86 1478 aa31.77■■■□□ 2.68
USP39-203ENST00000409470 TARBP1Q13395 1621 aaKnown RBP31.74■■■□□ 2.67
USP39-203ENST00000409470 ZEB1P37275 1124 aaPredicted RBP31.7■■■□□ 2.66
USP39-203ENST00000409470 WDR62O43379 1518 aa31.6■■■□□ 2.65
USP39-203ENST00000409470 ERCC6Q03468 1493 aa31.6■■■□□ 2.65
USP39-203ENST00000409470 CTTNBP2Q8WZ74 1663 aa31.58■■■□□ 2.65
USP39-203ENST00000409470 AQRO60306 1485 aaKnown RBP eCLIP31.52■■■□□ 2.642e-6■■■■□ 20.3
USP39-203ENST00000409470 IFT140Q96RY7 1462 aa31.52■■■□□ 2.64
USP39-203ENST00000409470 PBRM1Q86U86 1689 aa31.52■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms