RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 EFCAB5A4FU69 1503 aa29.92■■■□□ 2.38
HDAC1-201ENST00000373548 THOC2Q8NI27 1593 aaKnown RBP29.91■■■□□ 2.38
HDAC1-201ENST00000373548 KANK4Q5T7N3 995 aaPredicted RBP29.9■■■□□ 2.38
HDAC1-201ENST00000373548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.86■■■□□ 2.37
HDAC1-201ENST00000373548 ZNF608Q9ULD9 1512 aaPredicted RBP29.85■■■□□ 2.37
HDAC1-201ENST00000373548 ADAMTS12P58397 1594 aa29.85■■■□□ 2.37
HDAC1-201ENST00000373548 FHAD1B1AJZ9 1412 aa29.85■■■□□ 2.37
HDAC1-201ENST00000373548 GRIN2BQ13224 1484 aa29.85■■■□□ 2.37
HDAC1-201ENST00000373548 P3H3Q8IVL6 736 aa29.83■■■□□ 2.37
HDAC1-201ENST00000373548 FHOD3Q2V2M9 1422 aa29.83■■■□□ 2.37
HDAC1-201ENST00000373548 MAP3K1Q13233 1512 aa29.82■■■□□ 2.36
HDAC1-201ENST00000373548 TIAM1Q13009 1591 aa29.81■■■□□ 2.36
HDAC1-201ENST00000373548 PCF11O94913 1555 aaKnown RBP29.8■■■□□ 2.36
HDAC1-201ENST00000373548 SAMD9Q5K651 1589 aa29.77■■■□□ 2.36
HDAC1-201ENST00000373548 CCER1Q8TC90 406 aaPredicted RBP29.76■■■□□ 2.35
HDAC1-201ENST00000373548 EIF4G3O43432 1585 aaKnown RBP29.74■■■□□ 2.35
HDAC1-201ENST00000373548 CFAP43Q8NDM7 1665 aa29.72■■■□□ 2.35
HDAC1-201ENST00000373548 HNRNPUL2Q1KMD3 747 aaKnown RBP29.71■■■□□ 2.35
HDAC1-201ENST00000373548 FYCO1Q9BQS8 1478 aa29.7■■■□□ 2.34
HDAC1-201ENST00000373548 CASKIN1Q8WXD9 1431 aa29.68■■■□□ 2.34
HDAC1-201ENST00000373548 FMN1Q68DA7 1419 aa29.66■■■□□ 2.34
HDAC1-201ENST00000373548 RRBP1Q9P2E9 1410 aaKnown RBP29.66■■■□□ 2.34
HDAC1-201ENST00000373548 LRRC9Q6ZRR7 1453 aa29.66■■■□□ 2.34
HDAC1-201ENST00000373548 SNAPC4Q5SXM2 1469 aa29.64■■■□□ 2.33
HDAC1-201ENST00000373548 IQGAP2Q13576 1575 aa29.63■■■□□ 2.33
HDAC1-201ENST00000373548 ATP1B4Q9UN42 357 aaPredicted RBP29.56■■■□□ 2.32
HDAC1-201ENST00000373548 CCNB3Q8WWL7 1395 aa29.53■■■□□ 2.32
HDAC1-201ENST00000373548 MAGI1Q96QZ7 1491 aaPredicted RBP29.52■■■□□ 2.32
HDAC1-201ENST00000373548 GRIN2AQ12879 1464 aa29.52■■■□□ 2.32
HDAC1-201ENST00000373548 LRRIQ1Q96JM4 1722 aa29.49■■■□□ 2.31
HDAC1-201ENST00000373548 UGGT2Q9NYU1 1516 aa29.48■■■□□ 2.31
HDAC1-201ENST00000373548 KIAA0586Q9BVV6 1533 aa29.46■■■□□ 2.31
HDAC1-201ENST00000373548 PHLDB1Q86UU1 1377 aa29.45■■■□□ 2.3
HDAC1-201ENST00000373548 SYNJ2O15056 1496 aa29.43■■■□□ 2.3
HDAC1-201ENST00000373548 CEP170Q5SW79 1584 aa29.35■■■□□ 2.29
HDAC1-201ENST00000373548 CHMP7Q8WUX9 453 aaPredicted RBP29.34■■■□□ 2.29
HDAC1-201ENST00000373548 KIAA0556O60303 1618 aa29.33■■■□□ 2.29
HDAC1-201ENST00000373548 DISP1Q96F81 1524 aa29.33■■■□□ 2.29
HDAC1-201ENST00000373548 HECW1Q76N89 1606 aa29.32■■■□□ 2.28
HDAC1-201ENST00000373548 MTUS2Q5JR59 1369 aa29.3■■■□□ 2.28
HDAC1-201ENST00000373548 CCDC18Q5T9S5 1454 aa29.28■■■□□ 2.28
HDAC1-201ENST00000373548 NUP160Q12769 1436 aa29.26■■■□□ 2.27
HDAC1-201ENST00000373548 ITGAEP38570 1179 aa29.25■■■□□ 2.27
HDAC1-201ENST00000373548 EHBP1L1Q8N3D4 1523 aa29.25■■■□□ 2.27
HDAC1-201ENST00000373548 FBLN2P98095 1184 aa29.24■■■□□ 2.27
HDAC1-201ENST00000373548 EPRSP07814 1512 aaKnown RBP29.22■■■□□ 2.27
HDAC1-201ENST00000373548 MAGI3Q5TCQ9 1506 aa29.22■■■□□ 2.27
HDAC1-201ENST00000373548 SUPT6HQ7KZ85 1726 aaKnown RBP29.21■■■□□ 2.27
HDAC1-201ENST00000373548 FAM50AQ14320 339 aaKnown RBP29.2■■■□□ 2.26
HDAC1-201ENST00000373548 NCOA2Q15596 1464 aa29.19■■■□□ 2.26
HDAC1-201ENST00000373548 DHX57Q6P158 1386 aaKnown RBP29.18■■■□□ 2.26
HDAC1-201ENST00000373548 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.18■■■□□ 2.26
HDAC1-201ENST00000373548 FGD6Q6ZV73 1430 aa29.17■■■□□ 2.26
HDAC1-201ENST00000373548 CDK13Q14004 1512 aaKnown RBP29.15■■■□□ 2.26
HDAC1-201ENST00000373548 ARHGEF11O15085 1522 aa29.13■■■□□ 2.25
HDAC1-201ENST00000373548 RAPGEF6Q8TEU7 1601 aa29.11■■■□□ 2.25
HDAC1-201ENST00000373548 MYOM3Q5VTT5 1437 aa29.1■■■□□ 2.25
HDAC1-201ENST00000373548 CLSPNQ9HAW4 1339 aa29.09■■■□□ 2.25
HDAC1-201ENST00000373548 JPH4Q96JJ6 628 aa29.08■■■□□ 2.25
HDAC1-201ENST00000373548 RAB3GAP2Q9H2M9 1393 aa29.08■■■□□ 2.25
HDAC1-201ENST00000373548 NUP153P49790 1475 aaKnown RBP29.07■■■□□ 2.24
HDAC1-201ENST00000373548 SETD5Q9C0A6 1442 aa29.05■■■□□ 2.24
HDAC1-201ENST00000373548 CARMIL2Q6F5E8 1435 aa29.05■■■□□ 2.24
HDAC1-201ENST00000373548 ARID3CA6NKF2 412 aa29.02■■■□□ 2.24
HDAC1-201ENST00000373548 CHD1O14646 1710 aa29.02■■■□□ 2.24
HDAC1-201ENST00000373548 PTPN23Q9H3S7 1636 aa28.99■■■□□ 2.23
HDAC1-201ENST00000373548 PLB1Q6P1J6 1458 aa28.97■■■□□ 2.23
HDAC1-201ENST00000373548 TCOF1Q13428 1488 aaKnown RBP28.91■■■□□ 2.22
HDAC1-201ENST00000373548 PTPRKQ15262 1439 aa28.91■■■□□ 2.22
HDAC1-201ENST00000373548 ABCA8O94911 1581 aa28.86■■■□□ 2.21
HDAC1-201ENST00000373548 MIA2Q96PC5 1412 aa28.86■■■□□ 2.21
HDAC1-201ENST00000373548 MAPKBP1O60336 1514 aa28.86■■■□□ 2.21
HDAC1-201ENST00000373548 PRG4Q92954 1404 aaPredicted RBP28.85■■■□□ 2.21
HDAC1-201ENST00000373548 CDK11AQ9UQ88 783 aaPredicted RBP28.84■■■□□ 2.21
HDAC1-201ENST00000373548 HFM1A2PYH4 1435 aa28.82■■■□□ 2.2
HDAC1-201ENST00000373548 TROQ12816 1431 aaPredicted RBP28.81■■■□□ 2.2
HDAC1-201ENST00000373548 SHROOM2Q13796 1616 aa28.8■■■□□ 2.2
HDAC1-201ENST00000373548 ZNF316A6NFI3 1004 aaPredicted RBP28.76■■■□□ 2.19
HDAC1-201ENST00000373548 ADCY10Q96PN6 1610 aa28.75■■■□□ 2.19
HDAC1-201ENST00000373548 NAIPQ13075 1403 aa28.75■■■□□ 2.19
HDAC1-201ENST00000373548 PTPRGP23470 1445 aa28.72■■■□□ 2.19
HDAC1-201ENST00000373548 KIF14Q15058 1648 aa28.71■■■□□ 2.19
HDAC1-201ENST00000373548 ATP10BO94823 1461 aa28.71■■■□□ 2.19
HDAC1-201ENST00000373548 GCC2Q8IWJ2 1684 aa28.67■■■□□ 2.18
HDAC1-201ENST00000373548 ITSN2Q9NZM3 1697 aa28.67■■■□□ 2.18
HDAC1-201ENST00000373548 AKNAQ7Z591 1439 aa28.65■■■□□ 2.18
HDAC1-201ENST00000373548 DIEXFQ68CQ4 756 aaKnown RBP28.64■■■□□ 2.18
HDAC1-201ENST00000373548 CLASP1Q7Z460 1538 aa28.63■■■□□ 2.17
HDAC1-201ENST00000373548 DNMT1P26358 1616 aaKnown RBP28.63■■■□□ 2.17
HDAC1-201ENST00000373548 ERCC6L2Q5T890 1561 aa28.63■■■□□ 2.17
HDAC1-201ENST00000373548 UACAQ9BZF9 1416 aa28.62■■■□□ 2.17
HDAC1-201ENST00000373548 CHIC2Q9UKJ5 165 aa28.62■■■□□ 2.17
HDAC1-201ENST00000373548 GPATCH8Q9UKJ3 1502 aaKnown RBP28.62■■■□□ 2.17
HDAC1-201ENST00000373548 DAPK1P53355 1430 aa28.6■■■□□ 2.17
HDAC1-201ENST00000373548 ZNF644Q9H582 1327 aaPredicted RBP28.6■■■□□ 2.17
HDAC1-201ENST00000373548 RRP7BPQ9NSQ0 103 aa28.6■■■□□ 2.17
HDAC1-201ENST00000373548 PLEKHD1A6NEE1 506 aa28.59■■■□□ 2.17
HDAC1-201ENST00000373548 ABCC5O15440 1437 aa28.57■■■□□ 2.16
HDAC1-201ENST00000373548 CAMSAP2Q08AD1 1489 aa28.56■■■□□ 2.16
HDAC1-201ENST00000373548 ABCC10Q5T3U5 1492 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms