RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 NISCHQ9Y2I1 1504 aa43.27■■■■■ 4.52
HDAC1-201ENST00000373548 CCDC180Q9P1Z9 1646 aa37.45■■■■□ 3.58
HDAC1-201ENST00000373548 ZCCHC6Q5VYS8 1495 aaKnown RBP36.45■■■■□ 3.43
HDAC1-201ENST00000373548 SHROOM4Q9ULL8 1493 aa35.78■■■■□ 3.32
HDAC1-201ENST00000373548 DCAF1Q9Y4B6 1507 aa35.7■■■■□ 3.31
HDAC1-201ENST00000373548 DCAF8L2P0C7V8 631 aa35.65■■■■□ 3.3
HDAC1-201ENST00000373548 ABCC9O60706 1549 aa35.06■■■■□ 3.2
HDAC1-201ENST00000373548 MYO15BQ96JP2 1530 aa35.06■■■■□ 3.2
HDAC1-201ENST00000373548 NACADO15069 1562 aa34.74■■■■□ 3.15
HDAC1-201ENST00000373548 SUPT5HO00267 1087 aaKnown RBP34.65■■■■□ 3.14
HDAC1-201ENST00000373548 SCRIBQ14160 1630 aa34.62■■■■□ 3.13
HDAC1-201ENST00000373548 RB1CC1Q8TDY2 1594 aa34.34■■■■□ 3.09
HDAC1-201ENST00000373548 UNC13AQ9UPW8 1703 aa33.8■■■■□ 3
HDAC1-201ENST00000373548 RSF1Q96T23 1441 aaPredicted RBP33.79■■■■□ 3
HDAC1-201ENST00000373548 CECR2Q9BXF3 1484 aa33.65■■■□□ 2.98
HDAC1-201ENST00000373548 MROH2BQ7Z745 1585 aa33.5■■■□□ 2.95
HDAC1-201ENST00000373548 CHIC1Q5VXU3 224 aa33.41■■■□□ 2.94
HDAC1-201ENST00000373548 BICRAQ9NZM4 1560 aa33.38■■■□□ 2.93
HDAC1-201ENST00000373548 BAZ1AQ9NRL2 1556 aaPredicted RBP33.34■■■□□ 2.93
HDAC1-201ENST00000373548 WIZO95785 1651 aa33.28■■■□□ 2.92
HDAC1-201ENST00000373548 PABPN1Q86U42 306 aaKnown RBP eCLIP33.19■■■□□ 2.91e-6■□□□□ 10.2
HDAC1-201ENST00000373548 SMARCA4P51532 1647 aa33.17■■■□□ 2.9
HDAC1-201ENST00000373548 TOP2AP11388 1531 aaKnown RBP32.86■■■□□ 2.85
HDAC1-201ENST00000373548 PEG3Q9GZU2 1588 aa32.69■■■□□ 2.82
HDAC1-201ENST00000373548 SMARCA2P51531 1590 aa32.62■■■□□ 2.81
HDAC1-201ENST00000373548 CCDC88BA6NC98 1476 aa32.58■■■□□ 2.81
HDAC1-201ENST00000373548 EIF4G1Q04637 1599 aaKnown RBP32.57■■■□□ 2.8
HDAC1-201ENST00000373548 ATAD2BQ9ULI0 1458 aa32.49■■■□□ 2.79
HDAC1-201ENST00000373548 TRIM41Q8WV44 630 aa32.47■■■□□ 2.79
HDAC1-201ENST00000373548 BAZ1BQ9UIG0 1483 aaKnown RBP32.33■■■□□ 2.77
HDAC1-201ENST00000373548 LOC105371045A0A1W2PR82 267 aa32.21■■■□□ 2.75
HDAC1-201ENST00000373548 ABCC8Q09428 1581 aa32.11■■■□□ 2.73
HDAC1-201ENST00000373548 NCAPD3P42695 1498 aa32.08■■■□□ 2.73
HDAC1-201ENST00000373548 HMGXB3Q12766 1538 aa32.08■■■□□ 2.73
HDAC1-201ENST00000373548 FAM9AQ8IZU1 332 aaPredicted RBP31.99■■■□□ 2.71
HDAC1-201ENST00000373548 WRNQ14191 1432 aaPredicted RBP eCLIP31.77■■■□□ 2.68
HDAC1-201ENST00000373548 CC2D2AQ9P2K1 1620 aa31.72■■■□□ 2.67
HDAC1-201ENST00000373548 SYNJ1O43426 1573 aa31.67■■■□□ 2.66
HDAC1-201ENST00000373548 SOGA1O94964 1423 aa31.6■■■□□ 2.65
HDAC1-201ENST00000373548 EHMT2Q96KQ7 1210 aa31.57■■■□□ 2.64
HDAC1-201ENST00000373548 CFTRP13569 1480 aa31.53■■■□□ 2.64
HDAC1-201ENST00000373548 EEA1Q15075 1411 aa31.51■■■□□ 2.64
HDAC1-201ENST00000373548 RUSC2Q8N2Y8 1516 aa31.48■■■□□ 2.63
HDAC1-201ENST00000373548 TOP2BQ02880 1626 aa31.45■■■□□ 2.62
HDAC1-201ENST00000373548 PRDM2Q13029 1718 aa31.42■■■□□ 2.62
HDAC1-201ENST00000373548 BIVM-ERCC5R4GMW8 1640 aa31.41■■■□□ 2.62
HDAC1-201ENST00000373548 CSRNP3Q8WYN3 585 aa31.36■■■□□ 2.61
HDAC1-201ENST00000373548 CADPSQ9ULU8 1353 aa31.31■■■□□ 2.6
HDAC1-201ENST00000373548 CUX1P39880 1505 aa31.28■■■□□ 2.6
HDAC1-201ENST00000373548 PCGF6Q9BYE7 350 aa31.24■■■□□ 2.59
HDAC1-201ENST00000373548 GOLGA3Q08378 1498 aa31.16■■■□□ 2.58
HDAC1-201ENST00000373548 TNIKQ9UKE5 1360 aa31.16■■■□□ 2.58
HDAC1-201ENST00000373548 KIF21BO75037 1637 aa31.14■■■□□ 2.58
HDAC1-201ENST00000373548 CEP164Q9UPV0 1460 aa31.1■■■□□ 2.57
HDAC1-201ENST00000373548 CEP162Q5TB80 1403 aa31.07■■■□□ 2.56
HDAC1-201ENST00000373548 TRIM26Q12899 539 aaPredicted RBP31.04■■■□□ 2.56
HDAC1-201ENST00000373548 UBTFP17480 764 aaKnown RBP31.03■■■□□ 2.56
HDAC1-201ENST00000373548 FANCD2Q9BXW9 1451 aa31■■■□□ 2.55
HDAC1-201ENST00000373548 DNAJC5BQ9UF47 199 aa30.97■■■□□ 2.55
HDAC1-201ENST00000373548 NESP48681 1621 aa30.97■■■□□ 2.55
HDAC1-201ENST00000373548 RAPGEF2Q9Y4G8 1499 aa30.92■■■□□ 2.54
HDAC1-201ENST00000373548 LAMC3Q9Y6N6 1575 aa30.91■■■□□ 2.54
HDAC1-201ENST00000373548 KIF27Q86VH2 1401 aa30.89■■■□□ 2.54
HDAC1-201ENST00000373548 FGD5Q6ZNL6 1462 aa30.85■■■□□ 2.53
HDAC1-201ENST00000373548 PRXQ9BXM0 1461 aa30.84■■■□□ 2.53
HDAC1-201ENST00000373548 ERICH3Q5RHP9 1530 aa30.82■■■□□ 2.52
HDAC1-201ENST00000373548 DNMBPQ6XZF7 1577 aa30.79■■■□□ 2.52
HDAC1-201ENST00000373548 CUX2O14529 1486 aa30.75■■■□□ 2.51
HDAC1-201ENST00000373548 HRCP23327 699 aa30.73■■■□□ 2.51
HDAC1-201ENST00000373548 TOPBP1Q92547 1522 aa30.73■■■□□ 2.51
HDAC1-201ENST00000373548 CLIP1P30622 1438 aa30.7■■■□□ 2.5
HDAC1-201ENST00000373548 PPARGC1BQ86YN6 1023 aaKnown RBP30.7■■■□□ 2.5
HDAC1-201ENST00000373548 PDS5BQ9NTI5 1447 aa30.64■■■□□ 2.5
HDAC1-201ENST00000373548 POLA1P09884 1462 aaPredicted RBP30.62■■■□□ 2.49
HDAC1-201ENST00000373548 URB2Q14146 1524 aaKnown RBP30.61■■■□□ 2.49
HDAC1-201ENST00000373548 IGF1RP08069 1367 aa30.6■■■□□ 2.49
HDAC1-201ENST00000373548 KIF21AQ7Z4S6 1674 aa30.59■■■□□ 2.49
HDAC1-201ENST00000373548 RAD54L2Q9Y4B4 1467 aa30.56■■■□□ 2.48
HDAC1-201ENST00000373548 ABCA10Q8WWZ4 1543 aa30.55■■■□□ 2.48
HDAC1-201ENST00000373548 VPS8Q8N3P4 1428 aa30.49■■■□□ 2.47
HDAC1-201ENST00000373548 RANGAP1P46060 587 aaPredicted RBP30.45■■■□□ 2.47
HDAC1-201ENST00000373548 WDR97A6NE52 1622 aa30.44■■■□□ 2.46
HDAC1-201ENST00000373548 CARMIL1Q5VZK9 1371 aa30.44■■■□□ 2.46
HDAC1-201ENST00000373548 ARAP1Q96P48 1450 aa30.36■■■□□ 2.45
HDAC1-201ENST00000373548 TTBK1Q5TCY1 1321 aaPredicted RBP30.35■■■□□ 2.45
HDAC1-201ENST00000373548 CUL7Q14999 1698 aa30.29■■■□□ 2.44
HDAC1-201ENST00000373548 ABCA5Q8WWZ7 1642 aa30.28■■■□□ 2.44
HDAC1-201ENST00000373548 ARHGAP35Q9NRY4 1499 aa30.26■■■□□ 2.43
HDAC1-201ENST00000373548 MRC2Q9UBG0 1479 aa30.25■■■□□ 2.43
HDAC1-201ENST00000373548 TARBP1Q13395 1621 aaKnown RBP30.23■■■□□ 2.43
HDAC1-201ENST00000373548 TDRD9Q8NDG6 1382 aaKnown RBP30.21■■■□□ 2.43
HDAC1-201ENST00000373548 GAPVD1Q14C86 1478 aa30.18■■■□□ 2.42
HDAC1-201ENST00000373548 APLP2Q06481 763 aa30.16■■■□□ 2.42
HDAC1-201ENST00000373548 CTTNBP2Q8WZ74 1663 aa30.07■■■□□ 2.41
HDAC1-201ENST00000373548 WDR62O43379 1518 aa30.07■■■□□ 2.4
HDAC1-201ENST00000373548 PBRM1Q86U86 1689 aa30.01■■■□□ 2.39
HDAC1-201ENST00000373548 ZEB1P37275 1124 aaPredicted RBP30■■■□□ 2.39
HDAC1-201ENST00000373548 ERCC6Q03468 1493 aa29.96■■■□□ 2.39
HDAC1-201ENST00000373548 IFT140Q96RY7 1462 aa29.94■■■□□ 2.38
HDAC1-201ENST00000373548 AQRO60306 1485 aaKnown RBP eCLIP29.94■■■□□ 2.383e-7■■■■■ 35
Retrieved 100 of 20,778 RNA–protein pairs in 718.1 ms