RNA–Protein interactions for RNA: ENST00000309469.8

ATG4D-201, Transcript of autophagy related 4D cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4D, Length 1,949 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-201ENST00000309469 GRIN2BQ13224 1484 aa32.68■■■□□ 2.82
ATG4D-201ENST00000309469 ZNF608Q9ULD9 1512 aaPredicted RBP32.68■■■□□ 2.82
ATG4D-201ENST00000309469 FHAD1B1AJZ9 1412 aa32.66■■■□□ 2.82
ATG4D-201ENST00000309469 EFCAB5A4FU69 1503 aa32.6■■■□□ 2.81
ATG4D-201ENST00000309469 ADAMTS12P58397 1594 aa32.58■■■□□ 2.81
ATG4D-201ENST00000309469 P3H3Q8IVL6 736 aa32.55■■■□□ 2.8
ATG4D-201ENST00000309469 KANK4Q5T7N3 995 aaPredicted RBP32.51■■■□□ 2.8
ATG4D-201ENST00000309469 EIF4G3O43432 1585 aaKnown RBP32.5■■■□□ 2.79
ATG4D-201ENST00000309469 FHOD3Q2V2M9 1422 aa32.49■■■□□ 2.79
ATG4D-201ENST00000309469 MAP3K1Q13233 1512 aa32.43■■■□□ 2.78
ATG4D-201ENST00000309469 SNAPC4Q5SXM2 1469 aa32.43■■■□□ 2.78
ATG4D-201ENST00000309469 SAMD9Q5K651 1589 aa32.41■■■□□ 2.78
ATG4D-201ENST00000309469 ZEB1P37275 1124 aaPredicted RBP32.39■■■□□ 2.78
ATG4D-201ENST00000309469 PCF11O94913 1555 aaKnown RBP32.37■■■□□ 2.77
ATG4D-201ENST00000309469 TIAM1Q13009 1591 aa32.37■■■□□ 2.77
ATG4D-201ENST00000309469 FMN1Q68DA7 1419 aa32.35■■■□□ 2.77
ATG4D-201ENST00000309469 CASKIN1Q8WXD9 1431 aa32.34■■■□□ 2.77
ATG4D-201ENST00000309469 MAGI1Q96QZ7 1491 aaPredicted RBP32.34■■■□□ 2.77
ATG4D-201ENST00000309469 IQGAP2Q13576 1575 aa32.33■■■□□ 2.77
ATG4D-201ENST00000309469 FYCO1Q9BQS8 1478 aa32.33■■■□□ 2.77
ATG4D-201ENST00000309469 GRIN2AQ12879 1464 aa32.29■■■□□ 2.76
ATG4D-201ENST00000309469 ATP1B4Q9UN42 357 aaPredicted RBP32.27■■■□□ 2.76
ATG4D-201ENST00000309469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.26■■■□□ 2.76
ATG4D-201ENST00000309469 LRRC9Q6ZRR7 1453 aa32.25■■■□□ 2.75
ATG4D-201ENST00000309469 KIAA0586Q9BVV6 1533 aa32.23■■■□□ 2.75
ATG4D-201ENST00000309469 SYNJ2O15056 1496 aa32.23■■■□□ 2.75
ATG4D-201ENST00000309469 CFAP43Q8NDM7 1665 aa32.23■■■□□ 2.75
ATG4D-201ENST00000309469 HNRNPUL2Q1KMD3 747 aaKnown RBP32.22■■■□□ 2.75
ATG4D-201ENST00000309469 CHMP7Q8WUX9 453 aaPredicted RBP32.21■■■□□ 2.75
ATG4D-201ENST00000309469 RRBP1Q9P2E9 1410 aaKnown RBP32.19■■■□□ 2.74
ATG4D-201ENST00000309469 UGGT2Q9NYU1 1516 aa32.18■■■□□ 2.74
ATG4D-201ENST00000309469 CCER1Q8TC90 406 aaPredicted RBP32.18■■■□□ 2.74
ATG4D-201ENST00000309469 FBLN2P98095 1184 aa32.1■■■□□ 2.73
ATG4D-201ENST00000309469 CCNB3Q8WWL7 1395 aa32.08■■■□□ 2.73
ATG4D-201ENST00000309469 CEP170Q5SW79 1584 aa32.06■■■□□ 2.72
ATG4D-201ENST00000309469 NUP160Q12769 1436 aa32.03■■■□□ 2.72
ATG4D-201ENST00000309469 DISP1Q96F81 1524 aa32.02■■■□□ 2.72
ATG4D-201ENST00000309469 PHLDB1Q86UU1 1377 aa32■■■□□ 2.71
ATG4D-201ENST00000309469 KIAA0556O60303 1618 aa31.99■■■□□ 2.71
ATG4D-201ENST00000309469 LRRIQ1Q96JM4 1722 aa31.97■■■□□ 2.71
ATG4D-201ENST00000309469 MTUS2Q5JR59 1369 aa31.94■■■□□ 2.7
ATG4D-201ENST00000309469 CCDC18Q5T9S5 1454 aa31.92■■■□□ 2.7
ATG4D-201ENST00000309469 HECW1Q76N89 1606 aa31.92■■■□□ 2.7
ATG4D-201ENST00000309469 JPH4Q96JJ6 628 aa31.88■■■□□ 2.69
ATG4D-201ENST00000309469 EPRSP07814 1512 aaKnown RBP31.85■■■□□ 2.69
ATG4D-201ENST00000309469 EHBP1L1Q8N3D4 1523 aa31.82■■■□□ 2.69
ATG4D-201ENST00000309469 CARMIL2Q6F5E8 1435 aa31.82■■■□□ 2.68
ATG4D-201ENST00000309469 ITGAEP38570 1179 aa31.79■■■□□ 2.68
ATG4D-201ENST00000309469 FAM50AQ14320 339 aaKnown RBP31.77■■■□□ 2.68
ATG4D-201ENST00000309469 NCOA2Q15596 1464 aa31.76■■■□□ 2.68
ATG4D-201ENST00000309469 MAGI3Q5TCQ9 1506 aa31.76■■■□□ 2.68
ATG4D-201ENST00000309469 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.75■■■□□ 2.67
ATG4D-201ENST00000309469 CDK13Q14004 1512 aaKnown RBP31.74■■■□□ 2.67
ATG4D-201ENST00000309469 SUPT6HQ7KZ85 1726 aaKnown RBP31.74■■■□□ 2.67
ATG4D-201ENST00000309469 RAPGEF6Q8TEU7 1601 aa31.73■■■□□ 2.67
ATG4D-201ENST00000309469 FGD6Q6ZV73 1430 aa31.72■■■□□ 2.67
ATG4D-201ENST00000309469 NUP153P49790 1475 aaKnown RBP31.71■■■□□ 2.67
ATG4D-201ENST00000309469 CHD1O14646 1710 aa31.7■■■□□ 2.66
ATG4D-201ENST00000309469 ARHGEF11O15085 1522 aa31.69■■■□□ 2.66
ATG4D-201ENST00000309469 ARID3CA6NKF2 412 aa31.68■■■□□ 2.66
ATG4D-201ENST00000309469 MYOM3Q5VTT5 1437 aa31.67■■■□□ 2.66
ATG4D-201ENST00000309469 PLB1Q6P1J6 1458 aa31.63■■■□□ 2.65
ATG4D-201ENST00000309469 PRG4Q92954 1404 aaPredicted RBP31.6■■■□□ 2.65
ATG4D-201ENST00000309469 DHX57Q6P158 1386 aaKnown RBP31.59■■■□□ 2.65
ATG4D-201ENST00000309469 CDK11AQ9UQ88 783 aaPredicted RBP31.57■■■□□ 2.64
ATG4D-201ENST00000309469 SETD5Q9C0A6 1442 aa31.56■■■□□ 2.64
ATG4D-201ENST00000309469 RAB3GAP2Q9H2M9 1393 aa31.55■■■□□ 2.64
ATG4D-201ENST00000309469 CLSPNQ9HAW4 1339 aa31.54■■■□□ 2.64
ATG4D-201ENST00000309469 ABCA8O94911 1581 aa31.51■■■□□ 2.63
ATG4D-201ENST00000309469 SHROOM2Q13796 1616 aa31.49■■■□□ 2.63
ATG4D-201ENST00000309469 PTPN23Q9H3S7 1636 aa31.49■■■□□ 2.63
ATG4D-201ENST00000309469 PTPRGP23470 1445 aa31.47■■■□□ 2.63
ATG4D-201ENST00000309469 TCOF1Q13428 1488 aaKnown RBP31.46■■■□□ 2.63
ATG4D-201ENST00000309469 MIA2Q96PC5 1412 aa31.46■■■□□ 2.63
ATG4D-201ENST00000309469 TROQ12816 1431 aaPredicted RBP31.44■■■□□ 2.62
ATG4D-201ENST00000309469 PTPRKQ15262 1439 aa31.41■■■□□ 2.62
ATG4D-201ENST00000309469 ATP10BO94823 1461 aa31.37■■■□□ 2.61
ATG4D-201ENST00000309469 CLASP1Q7Z460 1538 aa31.36■■■□□ 2.61
ATG4D-201ENST00000309469 PLEKHD1A6NEE1 506 aa31.32■■■□□ 2.6
ATG4D-201ENST00000309469 HFM1A2PYH4 1435 aa31.31■■■□□ 2.6
ATG4D-201ENST00000309469 ADCY10Q96PN6 1610 aa31.3■■■□□ 2.6
ATG4D-201ENST00000309469 ERCC6L2Q5T890 1561 aa31.29■■■□□ 2.6
ATG4D-201ENST00000309469 UACAQ9BZF9 1416 aa31.28■■■□□ 2.6
ATG4D-201ENST00000309469 KIF14Q15058 1648 aa31.24■■■□□ 2.59
ATG4D-201ENST00000309469 NAIPQ13075 1403 aa31.24■■■□□ 2.59
ATG4D-201ENST00000309469 MAPKBP1O60336 1514 aa31.22■■■□□ 2.59
ATG4D-201ENST00000309469 GPATCH8Q9UKJ3 1502 aaKnown RBP31.22■■■□□ 2.59
ATG4D-201ENST00000309469 ZNF644Q9H582 1327 aaPredicted RBP31.18■■■□□ 2.58
ATG4D-201ENST00000309469 CFDP1Q9UEE9 299 aaPredicted RBP31.18■■■□□ 2.58
ATG4D-201ENST00000309469 ITSN2Q9NZM3 1697 aa31.17■■■□□ 2.58
ATG4D-201ENST00000309469 CHIC2Q9UKJ5 165 aa31.17■■■□□ 2.58
ATG4D-201ENST00000309469 AKNAQ7Z591 1439 aa31.16■■■□□ 2.58
ATG4D-201ENST00000309469 ABCC2Q92887 1545 aa31.14■■■□□ 2.58
ATG4D-201ENST00000309469 DAPK1P53355 1430 aa31.14■■■□□ 2.57
ATG4D-201ENST00000309469 ABCC10Q5T3U5 1492 aa31.13■■■□□ 2.57
ATG4D-201ENST00000309469 RRP7BPQ9NSQ0 103 aa31.13■■■□□ 2.57
ATG4D-201ENST00000309469 ABCC5O15440 1437 aa31.11■■■□□ 2.57
ATG4D-201ENST00000309469 DNMT1P26358 1616 aaKnown RBP31.11■■■□□ 2.57
ATG4D-201ENST00000309469 CAMSAP2Q08AD1 1489 aa31.09■■■□□ 2.57
ATG4D-201ENST00000309469 GCC2Q8IWJ2 1684 aa31.07■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms