Protein–RNA interactions for Protein: Q86UE6

LRRTM1, Leucine-rich repeat transmembrane neuronal protein 1, humanhuman

Predictions only

Length 522 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRTM1Q86UE6 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
LRRTM1Q86UE6 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC22.03■■□□□ 1.12
LRRTM1Q86UE6 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
LRRTM1Q86UE6 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LRRTM1Q86UE6 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
LRRTM1Q86UE6 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.01■■□□□ 1.11
LRRTM1Q86UE6 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRTM1Q86UE6 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.01■■□□□ 1.11
LRRTM1Q86UE6 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRTM1Q86UE6 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRTM1Q86UE6 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
LRRTM1Q86UE6 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
LRRTM1Q86UE6 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
LRRTM1Q86UE6 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
LRRTM1Q86UE6 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.99■■□□□ 1.11
LRRTM1Q86UE6 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
LRRTM1Q86UE6 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
LRRTM1Q86UE6 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LRRTM1Q86UE6 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRTM1Q86UE6 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LRRTM1Q86UE6 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRTM1Q86UE6 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRTM1Q86UE6 AL391121.1-201ENST00000607967 1349 ntBASIC21.98■■□□□ 1.11
LRRTM1Q86UE6 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRTM1Q86UE6 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRTM1Q86UE6 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRTM1Q86UE6 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.97■■□□□ 1.11
LRRTM1Q86UE6 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC21.97■■□□□ 1.11
LRRTM1Q86UE6 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
LRRTM1Q86UE6 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LRRTM1Q86UE6 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LRRTM1Q86UE6 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LRRTM1Q86UE6 AC091060.1-201ENST00000623524 1766 ntBASIC21.96■■□□□ 1.11
LRRTM1Q86UE6 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LRRTM1Q86UE6 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LRRTM1Q86UE6 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.95■■□□□ 1.11
LRRTM1Q86UE6 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LRRTM1Q86UE6 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.95■■□□□ 1.1
LRRTM1Q86UE6 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LRRTM1Q86UE6 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
LRRTM1Q86UE6 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
LRRTM1Q86UE6 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRRTM1Q86UE6 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRRTM1Q86UE6 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.93■■□□□ 1.1
LRRTM1Q86UE6 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
LRRTM1Q86UE6 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.92■■□□□ 1.1
LRRTM1Q86UE6 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.92■■□□□ 1.1
LRRTM1Q86UE6 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
LRRTM1Q86UE6 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LRRTM1Q86UE6 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LRRTM1Q86UE6 CAHM-201ENST00000604200 896 ntBASIC21.92■■□□□ 1.1
LRRTM1Q86UE6 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.91■■□□□ 1.1
LRRTM1Q86UE6 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRRTM1Q86UE6 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRRTM1Q86UE6 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRRTM1Q86UE6 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LRRTM1Q86UE6 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.9■■□□□ 1.1
LRRTM1Q86UE6 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
LRRTM1Q86UE6 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LRRTM1Q86UE6 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LRRTM1Q86UE6 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
LRRTM1Q86UE6 AC018358.1-201ENST00000631079 1402 ntBASIC21.89■■□□□ 1.1
LRRTM1Q86UE6 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.89■■□□□ 1.1
LRRTM1Q86UE6 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.1
LRRTM1Q86UE6 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
LRRTM1Q86UE6 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
LRRTM1Q86UE6 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
LRRTM1Q86UE6 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.88■■□□□ 1.09
LRRTM1Q86UE6 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LRRTM1Q86UE6 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
LRRTM1Q86UE6 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.88■■□□□ 1.09
LRRTM1Q86UE6 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LRRTM1Q86UE6 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.87■■□□□ 1.09
LRRTM1Q86UE6 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LRRTM1Q86UE6 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LRRTM1Q86UE6 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LRRTM1Q86UE6 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LRRTM1Q86UE6 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
LRRTM1Q86UE6 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LRRTM1Q86UE6 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
LRRTM1Q86UE6 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.86■■□□□ 1.09
LRRTM1Q86UE6 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.86■■□□□ 1.09
LRRTM1Q86UE6 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
LRRTM1Q86UE6 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
LRRTM1Q86UE6 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LRRTM1Q86UE6 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.84■■□□□ 1.09
LRRTM1Q86UE6 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LRRTM1Q86UE6 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
LRRTM1Q86UE6 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
LRRTM1Q86UE6 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
LRRTM1Q86UE6 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRRTM1Q86UE6 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRRTM1Q86UE6 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRRTM1Q86UE6 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.82■■□□□ 1.08
LRRTM1Q86UE6 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRRTM1Q86UE6 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRRTM1Q86UE6 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.81■■□□□ 1.08
LRRTM1Q86UE6 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LRRTM1Q86UE6 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRRTM1Q86UE6 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms