Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC40.06■■■■■ 4
COL17A1Q9UMD9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC40.05■■■■■ 4
COL17A1Q9UMD9 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
COL17A1Q9UMD9 AC092296.2-201ENST00000589470 999 ntBASIC40.04■■■■■ 4
COL17A1Q9UMD9 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC40.03■■■■■ 4
COL17A1Q9UMD9 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC40.02■■■■■ 4
COL17A1Q9UMD9 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC40.02■■■■■ 4
COL17A1Q9UMD9 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
COL17A1Q9UMD9 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC40■■■■□ 3.99
COL17A1Q9UMD9 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC40■■■■□ 3.99
COL17A1Q9UMD9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC39.99■■■■□ 3.99
COL17A1Q9UMD9 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC39.98■■■■□ 3.99
COL17A1Q9UMD9 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC39.98■■■■□ 3.99
COL17A1Q9UMD9 CHST11-203ENST00000547956 936 ntTSL 2 BASIC39.98■■■■□ 3.99
COL17A1Q9UMD9 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC39.96■■■■□ 3.99
COL17A1Q9UMD9 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC39.96■■■■□ 3.99
COL17A1Q9UMD9 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC39.94■■■■□ 3.98
COL17A1Q9UMD9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC39.94■■■■□ 3.98
COL17A1Q9UMD9 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC39.94■■■■□ 3.98
COL17A1Q9UMD9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC39.94■■■■□ 3.98
COL17A1Q9UMD9 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC39.94■■■■□ 3.98
COL17A1Q9UMD9 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC39.94■■■■□ 3.98
COL17A1Q9UMD9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC39.92■■■■□ 3.98
COL17A1Q9UMD9 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC39.91■■■■□ 3.98
COL17A1Q9UMD9 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC39.91■■■■□ 3.98
COL17A1Q9UMD9 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC39.91■■■■□ 3.98
COL17A1Q9UMD9 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC39.89■■■■□ 3.98
COL17A1Q9UMD9 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
COL17A1Q9UMD9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
COL17A1Q9UMD9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC39.89■■■■□ 3.98
COL17A1Q9UMD9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC39.89■■■■□ 3.98
COL17A1Q9UMD9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC39.89■■■■□ 3.98
COL17A1Q9UMD9 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC39.89■■■■□ 3.98
COL17A1Q9UMD9 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC39.88■■■■□ 3.98
COL17A1Q9UMD9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC39.88■■■■□ 3.98
COL17A1Q9UMD9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC39.88■■■■□ 3.97
COL17A1Q9UMD9 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC39.88■■■■□ 3.97
COL17A1Q9UMD9 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC39.87■■■■□ 3.97
COL17A1Q9UMD9 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC39.85■■■■□ 3.97
COL17A1Q9UMD9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC39.85■■■■□ 3.97
COL17A1Q9UMD9 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC39.85■■■■□ 3.97
COL17A1Q9UMD9 AC129492.7-201ENST00000622992 756 ntBASIC39.85■■■■□ 3.97
COL17A1Q9UMD9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC39.84■■■■□ 3.97
COL17A1Q9UMD9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC39.82■■■■□ 3.97
COL17A1Q9UMD9 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC39.82■■■■□ 3.97
COL17A1Q9UMD9 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC39.82■■■■□ 3.97
COL17A1Q9UMD9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC39.82■■■■□ 3.96
COL17A1Q9UMD9 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC39.81■■■■□ 3.96
COL17A1Q9UMD9 AC148477.6-201ENST00000623746 465 ntBASIC39.81■■■■□ 3.96
COL17A1Q9UMD9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC39.81■■■■□ 3.96
COL17A1Q9UMD9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC39.81■■■■□ 3.96
COL17A1Q9UMD9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC39.81■■■■□ 3.96
COL17A1Q9UMD9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC39.8■■■■□ 3.96
COL17A1Q9UMD9 MIR935-201ENST00000401179 91 ntBASIC39.78■■■■□ 3.96
COL17A1Q9UMD9 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC39.78■■■■□ 3.96
COL17A1Q9UMD9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC39.78■■■■□ 3.96
COL17A1Q9UMD9 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC39.77■■■■□ 3.96
COL17A1Q9UMD9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC39.77■■■■□ 3.96
COL17A1Q9UMD9 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC39.77■■■■□ 3.96
COL17A1Q9UMD9 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC39.76■■■■□ 3.96
COL17A1Q9UMD9 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC39.75■■■■□ 3.95
COL17A1Q9UMD9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC39.74■■■■□ 3.95
COL17A1Q9UMD9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC39.74■■■■□ 3.95
COL17A1Q9UMD9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC39.73■■■■□ 3.95
COL17A1Q9UMD9 ECEL1P2-201ENST00000461596 1295 ntBASIC39.72■■■■□ 3.95
COL17A1Q9UMD9 AC131212.1-201ENST00000613771 668 ntBASIC39.72■■■■□ 3.95
COL17A1Q9UMD9 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
COL17A1Q9UMD9 DUX4L18-201ENST00000553347 1267 ntBASIC39.71■■■■□ 3.95
COL17A1Q9UMD9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC39.71■■■■□ 3.95
COL17A1Q9UMD9 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC39.71■■■■□ 3.95
COL17A1Q9UMD9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
COL17A1Q9UMD9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC39.68■■■■□ 3.94
COL17A1Q9UMD9 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC39.68■■■■□ 3.94
COL17A1Q9UMD9 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC39.67■■■■□ 3.94
COL17A1Q9UMD9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC39.67■■■■□ 3.94
COL17A1Q9UMD9 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC39.67■■■■□ 3.94
COL17A1Q9UMD9 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC39.66■■■■□ 3.94
COL17A1Q9UMD9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC39.65■■■■□ 3.94
COL17A1Q9UMD9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC39.65■■■■□ 3.94
COL17A1Q9UMD9 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC39.65■■■■□ 3.94
COL17A1Q9UMD9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC39.65■■■■□ 3.94
COL17A1Q9UMD9 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
COL17A1Q9UMD9 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC39.63■■■■□ 3.93
COL17A1Q9UMD9 AC009299.2-201ENST00000482477 511 ntBASIC39.62■■■■□ 3.93
COL17A1Q9UMD9 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC39.62■■■■□ 3.93
COL17A1Q9UMD9 THA1P-201ENST00000590384 1145 ntBASIC39.62■■■■□ 3.93
COL17A1Q9UMD9 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC39.62■■■■□ 3.93
COL17A1Q9UMD9 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC39.62■■■■□ 3.93
COL17A1Q9UMD9 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC39.61■■■■□ 3.93
COL17A1Q9UMD9 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC39.61■■■■□ 3.93
COL17A1Q9UMD9 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
COL17A1Q9UMD9 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC39.61■■■■□ 3.93
COL17A1Q9UMD9 AL592293.1-201ENST00000502889 1188 ntBASIC39.61■■■■□ 3.93
COL17A1Q9UMD9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
COL17A1Q9UMD9 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
COL17A1Q9UMD9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC39.59■■■■□ 3.93
COL17A1Q9UMD9 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC39.59■■■■□ 3.93
COL17A1Q9UMD9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC39.58■■■■□ 3.93
COL17A1Q9UMD9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC39.58■■■■□ 3.93
COL17A1Q9UMD9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC39.58■■■■□ 3.93
Retrieved 100 of 98,524 protein–RNA pairs in 7.3 ms