Protein–RNA interactions for Protein: Q9NR30

DDX21, Nucleolar RNA helicase 2, humanhuman

Known RBP eCLIP

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX21Q9NR30 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.91□□□□□ -1.144e-6■□□□□ 11.2
DDX21Q9NR30 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC7.28□□□□□ -1.244e-6■□□□□ 11.2
DDX21Q9NR30 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC7.28□□□□□ -1.244e-6■□□□□ 11.2
DDX21Q9NR30 MDH1-204ENST00000421012 573 ntTSL 43.07□□□□□ -1.924e-6■□□□□ 11.2
DDX21Q9NR30 HNRNPM-205ENST00000596295 910 ntTSL 323.34■■□□□ 1.338e-12■□□□□ 11.1
DDX21Q9NR30 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.154e-6■□□□□ 11.1
DDX21Q9NR30 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.014e-6■□□□□ 11.1
DDX21Q9NR30 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.124e-6■□□□□ 11.1
DDX21Q9NR30 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.84■□□□□ 0.613e-7■□□□□ 11
DDX21Q9NR30 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.33e-7■□□□□ 11
DDX21Q9NR30 SRPRA-202ENST00000527817 687 ntTSL 216.5■□□□□ 0.233e-7■□□□□ 11
DDX21Q9NR30 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.357e-10■□□□□ 10.9
DDX21Q9NR30 PDE3A-202ENST00000542675 685 ntTSL 315.78■□□□□ 0.127e-10■□□□□ 10.9
DDX21Q9NR30 CUX1-210ENST00000497815 947 ntTSL 215.29■□□□□ 0.041e-7■□□□□ 10.9
DDX21Q9NR30 CUX1-202ENST00000292538 2930 ntTSL 1 (best) BASIC14.11□□□□□ -0.151e-7■□□□□ 10.9
DDX21Q9NR30 CUX1-212ENST00000547394 2878 ntTSL 2 BASIC13.63□□□□□ -0.231e-7■□□□□ 10.9
DDX21Q9NR30 CUX1-204ENST00000393824 2331 ntTSL 2 BASIC13.4□□□□□ -0.261e-7■□□□□ 10.9
DDX21Q9NR30 CUX1-221ENST00000622516 2990 ntTSL 1 (best) BASIC13.02□□□□□ -0.331e-7■□□□□ 10.9
DDX21Q9NR30 CUX1-205ENST00000425244 2776 ntTSL 2 BASIC12.95□□□□□ -0.341e-7■□□□□ 10.9
DDX21Q9NR30 CUX1-206ENST00000437600 3031 ntTSL 1 (best) BASIC11.54□□□□□ -0.561e-7■□□□□ 10.9
DDX21Q9NR30 CUX1-203ENST00000360264 13762 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.71e-7■□□□□ 10.9
DDX21Q9NR30 CUX1-220ENST00000607092 559 ntTSL 38.31□□□□□ -1.081e-7■□□□□ 10.9
DDX21Q9NR30 SLC37A3-210ENST00000469193 647 ntTSL 329.67■■■□□ 2.341e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-204ENST00000460560 2111 ntTSL 523.83■■□□□ 1.411e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-208ENST00000464865 1228 ntTSL 222.06■■□□□ 1.121e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.461e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-203ENST00000447932 3254 ntTSL 1 (best) BASIC16.35■□□□□ 0.211e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-222ENST00000490760 574 ntTSL 515.2■□□□□ 0.021e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-227ENST00000495257 573 ntTSL 413.91□□□□□ -0.181e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-215ENST00000477571 3488 ntTSL 513.19□□□□□ -0.31e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-205ENST00000461089 617 ntTSL 412.56□□□□□ -0.41e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-224ENST00000491505 544 ntTSL 210.34□□□□□ -0.751e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-202ENST00000340308 2955 ntTSL 1 (best) BASIC9.55□□□□□ -0.881e-323■□□□□ 10.8
DDX21Q9NR30 SLC37A3-206ENST00000462881 551 ntTSL 46.46□□□□□ -1.381e-323■□□□□ 10.8
DDX21Q9NR30 RNA5SP248-201ENST00000365602 127 ntBASIC16.73■□□□□ 0.271e-323■□□□□ 10.7
DDX21Q9NR30 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.511e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-203ENST00000449064 538 ntTSL 417.28■□□□□ 0.361e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-210ENST00000640601 855 ntTSL 517.22■□□□□ 0.351e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.341e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC15.73■□□□□ 0.111e-12■□□□□ 10.7
DDX21Q9NR30 RABGEF1-211ENST00000503687 4139 ntTSL 215.07■□□□□ 01e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-209ENST00000640385 4118 ntTSL 5 BASIC14.94□□□□□ -0.021e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-211ENST00000640851 3745 ntTSL 5 BASIC13.29□□□□□ -0.281e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-207ENST00000639879 5098 ntTSL 4 BASIC12.68□□□□□ -0.381e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-208ENST00000640234 1704 ntTSL 512.01□□□□□ -0.491e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-204ENST00000638524 3747 ntTSL 511.08□□□□□ -0.641e-12■□□□□ 10.7
DDX21Q9NR30 KCTD7-205ENST00000638540 4471 ntTSL 510.32□□□□□ -0.761e-12■□□□□ 10.7
DDX21Q9NR30 SLC16A1-204ENST00000458229 2201 ntTSL 223.64■■□□□ 1.381e-6■□□□□ 10.6
DDX21Q9NR30 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.391e-6■□□□□ 10.6
DDX21Q9NR30 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.161e-6■□□□□ 10.6
DDX21Q9NR30 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.96e-12■□□□□ 10.6
DDX21Q9NR30 HNRNPM-207ENST00000597081 1004 ntTSL 526.89■■□□□ 1.96e-12■□□□□ 10.6
DDX21Q9NR30 HNRNPM-208ENST00000597270 1147 ntTSL 226.52■■□□□ 1.846e-12■□□□□ 10.6
DDX21Q9NR30 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.85■■□□□ 1.256e-12■□□□□ 10.6
DDX21Q9NR30 HNRNPM-214ENST00000600806 2373 ntTSL 522.83■■□□□ 1.256e-12■□□□□ 10.6
DDX21Q9NR30 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.056e-12■□□□□ 10.6
DDX21Q9NR30 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.11e-19■□□□□ 10.6
DDX21Q9NR30 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.11e-19■□□□□ 10.6
DDX21Q9NR30 DDX17-203ENST00000403230 2322 ntAPPRIS ALT2 TSL 1 (best)19.69■□□□□ 0.741e-19■□□□□ 10.6
DDX21Q9NR30 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.331e-19■□□□□ 10.6
DDX21Q9NR30 DDX17-204ENST00000431312 1853 ntTSL 1 (best)16.33■□□□□ 0.21e-19■□□□□ 10.6
DDX21Q9NR30 DDX17-201ENST00000216019 6441 ntTSL 1 (best)14.68□□□□□ -0.061e-19■□□□□ 10.6
DDX21Q9NR30 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC16.3■□□□□ 0.22e-22■□□□□ 10.5
DDX21Q9NR30 MT-TI-201ENST00000387365 69 ntBASIC0.54□□□□□ -2.321e-323■□□□□ 10.4
DDX21Q9NR30 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.419e-6■□□□□ 10.3
DDX21Q9NR30 IGF2BP3-213ENST00000491719 800 ntTSL 527.31■■□□□ 1.962e-6■□□□□ 10.3
DDX21Q9NR30 CRKL-202ENST00000411769 2037 ntTSL 1 (best)24.01■■□□□ 1.439e-6■□□□□ 10.3
DDX21Q9NR30 IGF2BP3-210ENST00000476938 500 ntTSL 220.77■□□□□ 0.922e-6■□□□□ 10.3
DDX21Q9NR30 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.839e-6■□□□□ 10.3
DDX21Q9NR30 IGF2BP3-206ENST00000468005 2948 ntTSL 516.87■□□□□ 0.292e-6■□□□□ 10.3
DDX21Q9NR30 IGF2BP3-202ENST00000421467 2988 ntTSL 511.52□□□□□ -0.572e-6■□□□□ 10.3
DDX21Q9NR30 RELN-201ENST00000343529 11565 ntAPPRIS P3 TSL 5 BASIC11.2□□□□□ -0.625e-8■□□□□ 10.3
DDX21Q9NR30 RELN-202ENST00000424685 11571 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.625e-8■□□□□ 10.3
DDX21Q9NR30 RELN-203ENST00000428762 11571 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.625e-8■□□□□ 10.3
DDX21Q9NR30 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.132e-6■□□□□ 10.3
DDX21Q9NR30 SNRNP200-202ENST00000429650 2637 ntTSL 215.98■□□□□ 0.159e-7■□□□□ 10.3
DDX21Q9NR30 SNRNP200-208ENST00000497539 2666 ntTSL 1 (best)14.23□□□□□ -0.139e-7■□□□□ 10.3
DDX21Q9NR30 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.439e-7■□□□□ 10.3
DDX21Q9NR30 MTRNR2L1-201ENST00000540040 1553 ntAPPRIS P1 BASIC11.39□□□□□ -0.591e-16■□□□□ 10.2
DDX21Q9NR30 RPL39-202ENST00000468844 1915 ntTSL 1 (best)22.35■■□□□ 1.171e-46■□□□□ 10.1
DDX21Q9NR30 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.391e-46■□□□□ 10.1
DDX21Q9NR30 RPL39-203ENST00000477403 405 ntTSL 34.77□□□□□ -1.651e-46■□□□□ 10.1
DDX21Q9NR30 SNORA69-201ENST00000383895 132 ntBASIC3.8□□□□□ -1.81e-46■□□□□ 10.1
DDX21Q9NR30 EIF4A1-206ENST00000577929 696 ntTSL 224.56■■□□□ 1.525e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-216ENST00000580888 710 ntTSL 222.24■■□□□ 1.155e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC22.09■■□□□ 1.135e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-208ENST00000578476 573 ntTSL 221.42■■□□□ 1.025e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.775e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-219ENST00000581770 447 ntTSL 218.32■□□□□ 0.525e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-235ENST00000584860 1109 ntTSL 317.75■□□□□ 0.435e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-205ENST00000577738 531 ntTSL 216.64■□□□□ 0.255e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-214ENST00000580461 909 ntTSL 216.55■□□□□ 0.245e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-236ENST00000584901 1021 ntTSL 215.35■□□□□ 0.055e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-226ENST00000582848 591 ntTSL 315.35■□□□□ 0.055e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-213ENST00000579139 568 ntTSL 415.28■□□□□ 0.045e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC14.53□□□□□ -0.085e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-218ENST00000581544 1444 ntTSL 214.41□□□□□ -0.15e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-223ENST00000582169 552 ntTSL 413.86□□□□□ -0.195e-7■□□□□ 10.1
DDX21Q9NR30 EIF4A1-229ENST00000583802 563 ntTSL 413.86□□□□□ -0.195e-7■□□□□ 10.1
DDX21Q9NR30 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC13.72□□□□□ -0.215e-7■□□□□ 10.1
Retrieved 100 of 1,140 protein–RNA pairs in 123.6 ms