RNA–Protein interactions for RNA: ENST00000527817.1

SRPRA-202, Transcript of SRP receptor subunit alpha, humanhuman

TSL 2

Gene SRPRA, Length 687 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRPRA-202ENST00000527817 NISCHQ9Y2I1 1504 aa31.31■■■□□ 2.6
SRPRA-202ENST00000527817 ABCC9O60706 1549 aa28.59■■■□□ 2.17
SRPRA-202ENST00000527817 CCDC180Q9P1Z9 1646 aa28.19■■■□□ 2.1
SRPRA-202ENST00000527817 DNAJC5BQ9UF47 199 aa27.26■■□□□ 1.95
SRPRA-202ENST00000527817 RB1CC1Q8TDY2 1594 aa27.05■■□□□ 1.92
SRPRA-202ENST00000527817 NACADO15069 1562 aa26.8■■□□□ 1.88
SRPRA-202ENST00000527817 DCAF8L2P0C7V8 631 aa26.64■■□□□ 1.86
SRPRA-202ENST00000527817 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.85
SRPRA-202ENST00000527817 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
SRPRA-202ENST00000527817 MYO15BQ96JP2 1530 aa26.35■■□□□ 1.81
SRPRA-202ENST00000527817 BICRAQ9NZM4 1560 aa26.28■■□□□ 1.8
SRPRA-202ENST00000527817 SHROOM4Q9ULL8 1493 aa25.91■■□□□ 1.74
SRPRA-202ENST00000527817 DCAF1Q9Y4B6 1507 aa25.86■■□□□ 1.73
SRPRA-202ENST00000527817 ZCCHC6Q5VYS8 1495 aaKnown RBP25.83■■□□□ 1.73
SRPRA-202ENST00000527817 CECR2Q9BXF3 1484 aa25.82■■□□□ 1.72
SRPRA-202ENST00000527817 CC2D2AQ9P2K1 1620 aa25.8■■□□□ 1.72
SRPRA-202ENST00000527817 EIF4G1Q04637 1599 aaKnown RBP25.65■■□□□ 1.7
SRPRA-202ENST00000527817 SCRIBQ14160 1630 aa25.63■■□□□ 1.69
SRPRA-202ENST00000527817 DNAJC5Q9H3Z4 198 aa25.34■■□□□ 1.65
SRPRA-202ENST00000527817 CUX2O14529 1486 aa24.83■■□□□ 1.56
SRPRA-202ENST00000527817 NCAPD3P42695 1498 aa24.8■■□□□ 1.56
SRPRA-202ENST00000527817 ERCC6Q03468 1493 aa24.7■■□□□ 1.55
SRPRA-202ENST00000527817 ATAD2BQ9ULI0 1458 aa24.64■■□□□ 1.53
SRPRA-202ENST00000527817 SMARCA2P51531 1590 aa24.52■■□□□ 1.52
SRPRA-202ENST00000527817 HMGXB3Q12766 1538 aa24.51■■□□□ 1.51
SRPRA-202ENST00000527817 NESP48681 1621 aa24.45■■□□□ 1.5
SRPRA-202ENST00000527817 SMARCA4P51532 1647 aa24.45■■□□□ 1.5
SRPRA-202ENST00000527817 BAZ1BQ9UIG0 1483 aaKnown RBP24.34■■□□□ 1.49
SRPRA-202ENST00000527817 BAZ1AQ9NRL2 1556 aaPredicted RBP24.3■■□□□ 1.48
SRPRA-202ENST00000527817 PEG3Q9GZU2 1588 aa24.26■■□□□ 1.47
SRPRA-202ENST00000527817 THOC2Q8NI27 1593 aaKnown RBP24.23■■□□□ 1.47
SRPRA-202ENST00000527817 LAMC3Q9Y6N6 1575 aa24.23■■□□□ 1.47
SRPRA-202ENST00000527817 PDS5BQ9NTI5 1447 aa24.16■■□□□ 1.46
SRPRA-202ENST00000527817 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
SRPRA-202ENST00000527817 KIF21AQ7Z4S6 1674 aa24.06■■□□□ 1.44
SRPRA-202ENST00000527817 CADPSQ9ULU8 1353 aa24.03■■□□□ 1.44
SRPRA-202ENST00000527817 TRIM41Q8WV44 630 aa23.99■■□□□ 1.43
SRPRA-202ENST00000527817 MRC2Q9UBG0 1479 aa23.92■■□□□ 1.42
SRPRA-202ENST00000527817 WDR62O43379 1518 aa23.85■■□□□ 1.41
SRPRA-202ENST00000527817 WIZO95785 1651 aa23.76■■□□□ 1.39
SRPRA-202ENST00000527817 CEP164Q9UPV0 1460 aa23.74■■□□□ 1.39
SRPRA-202ENST00000527817 OSCARQ8IYS5 282 aa23.73■■□□□ 1.39
SRPRA-202ENST00000527817 FANCD2Q9BXW9 1451 aa23.7■■□□□ 1.38
SRPRA-202ENST00000527817 CFTRP13569 1480 aa23.65■■□□□ 1.38
SRPRA-202ENST00000527817 URB2Q14146 1524 aaKnown RBP23.52■■□□□ 1.36
SRPRA-202ENST00000527817 RSF1Q96T23 1441 aaPredicted RBP23.5■■□□□ 1.35
SRPRA-202ENST00000527817 TOP2AP11388 1531 aaKnown RBP23.44■■□□□ 1.34
SRPRA-202ENST00000527817 IFT140Q96RY7 1462 aa23.31■■□□□ 1.32
SRPRA-202ENST00000527817 RIMBP3CA6NJZ7 1639 aa23.31■■□□□ 1.32
SRPRA-202ENST00000527817 RIMBP3BA6NNM3 1639 aa23.31■■□□□ 1.32
SRPRA-202ENST00000527817 RIMBP3Q9UFD9 1639 aa23.31■■□□□ 1.32
SRPRA-202ENST00000527817 ZNF608Q9ULD9 1512 aaPredicted RBP23.28■■□□□ 1.32
SRPRA-202ENST00000527817 PRDM2Q13029 1718 aa23.25■■□□□ 1.31
SRPRA-202ENST00000527817 CCDC88BA6NC98 1476 aa23.24■■□□□ 1.31
SRPRA-202ENST00000527817 ARHGEF11O15085 1522 aa23.22■■□□□ 1.31
SRPRA-202ENST00000527817 TOPBP1Q92547 1522 aa23.21■■□□□ 1.31
SRPRA-202ENST00000527817 ABCC8Q09428 1581 aa23.18■■□□□ 1.3
SRPRA-202ENST00000527817 CYB5RLQ6IPT4 315 aa23.16■■□□□ 1.3
SRPRA-202ENST00000527817 EIF4G3O43432 1585 aaKnown RBP23.07■■□□□ 1.28
SRPRA-202ENST00000527817 AQRO60306 1485 aaKnown RBP eCLIP23.07■■□□□ 1.286e-9■■□□□ 13.9
SRPRA-202ENST00000527817 DNMBPQ6XZF7 1577 aa23.06■■□□□ 1.28
SRPRA-202ENST00000527817 FBLN2P98095 1184 aa23.01■■□□□ 1.27
SRPRA-202ENST00000527817 TARBP1Q13395 1621 aaKnown RBP23■■□□□ 1.27
SRPRA-202ENST00000527817 TRHP20396 242 aaPredicted RBP23■■□□□ 1.27
SRPRA-202ENST00000527817 ARAP1Q96P48 1450 aa22.97■■□□□ 1.27
SRPRA-202ENST00000527817 CHD1O14646 1710 aa22.96■■□□□ 1.27
SRPRA-202ENST00000527817 POLA1P09884 1462 aaPredicted RBP22.94■■□□□ 1.26
SRPRA-202ENST00000527817 SOGA1O94964 1423 aa22.89■■□□□ 1.25
SRPRA-202ENST00000527817 TDRD9Q8NDG6 1382 aaKnown RBP22.88■■□□□ 1.25
SRPRA-202ENST00000527817 RAD54L2Q9Y4B4 1467 aa22.87■■□□□ 1.25
SRPRA-202ENST00000527817 CHMP7Q8WUX9 453 aaPredicted RBP22.81■■□□□ 1.24
SRPRA-202ENST00000527817 WDR97A6NE52 1622 aa22.76■■□□□ 1.23
SRPRA-202ENST00000527817 SNAPC4Q5SXM2 1469 aa22.76■■□□□ 1.23
SRPRA-202ENST00000527817 CLASP1Q7Z460 1538 aa22.75■■□□□ 1.23
SRPRA-202ENST00000527817 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
SRPRA-202ENST00000527817 MAGI1Q96QZ7 1491 aaPredicted RBP22.73■■□□□ 1.23
SRPRA-202ENST00000527817 GRIN2BQ13224 1484 aa22.7■■□□□ 1.22
SRPRA-202ENST00000527817 SYNJ1O43426 1573 aa22.7■■□□□ 1.22
SRPRA-202ENST00000527817 SYNJ2O15056 1496 aa22.66■■□□□ 1.22
SRPRA-202ENST00000527817 CUX1P39880 1505 aa22.65■■□□□ 1.22
SRPRA-202ENST00000527817 AEBP2Q6ZN18 517 aaPredicted RBP22.62■■□□□ 1.21
SRPRA-202ENST00000527817 GAPVD1Q14C86 1478 aa22.57■■□□□ 1.2
SRPRA-202ENST00000527817 ABCA10Q8WWZ4 1543 aa22.48■■□□□ 1.19
SRPRA-202ENST00000527817 PBRM1Q86U86 1689 aa22.47■■□□□ 1.19
SRPRA-202ENST00000527817 ABCA5Q8WWZ7 1642 aa22.42■■□□□ 1.18
SRPRA-202ENST00000527817 GRIN2AQ12879 1464 aa22.38■■□□□ 1.17
SRPRA-202ENST00000527817 ERCC6L2Q5T890 1561 aa22.35■■□□□ 1.17
SRPRA-202ENST00000527817 NUP160Q12769 1436 aa22.35■■□□□ 1.17
SRPRA-202ENST00000527817 WRNQ14191 1432 aaPredicted RBP eCLIP22.35■■□□□ 1.17
SRPRA-202ENST00000527817 CEP170Q5SW79 1584 aa22.3■■□□□ 1.16
SRPRA-202ENST00000527817 FHAD1B1AJZ9 1412 aa22.28■■□□□ 1.16
SRPRA-202ENST00000527817 ADAMTS12P58397 1594 aa22.26■■□□□ 1.15
SRPRA-202ENST00000527817 SHROOM2Q13796 1616 aa22.24■■□□□ 1.15
SRPRA-202ENST00000527817 SUPT5HO00267 1087 aaKnown RBP22.2■■□□□ 1.14
SRPRA-202ENST00000527817 JPH4Q96JJ6 628 aa22.2■■□□□ 1.14
SRPRA-202ENST00000527817 ERICH3Q5RHP9 1530 aa22.19■■□□□ 1.14
SRPRA-202ENST00000527817 TOP2BQ02880 1626 aa22.18■■□□□ 1.14
SRPRA-202ENST00000527817 PRG4Q92954 1404 aaPredicted RBP22.17■■□□□ 1.14
SRPRA-202ENST00000527817 BIVM-ERCC5R4GMW8 1640 aa22.17■■□□□ 1.14
SRPRA-202ENST00000527817 KIF13AQ9H1H9 1805 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms