RNA–Protein interactions for RNA: ENST00000477403.1

RPL39-203, Transcript of ribosomal protein L39, humanhuman

TSL 3

Gene RPL39, Length 405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39-203ENST00000477403 AEBP2Q6ZN18 517 aaPredicted RBP20.47■□□□□ 0.87
RPL39-203ENST00000477403 CHIC1Q5VXU3 224 aa19.78■□□□□ 0.76
RPL39-203ENST00000477403 SENP3Q9H4L4 574 aaPredicted RBP17.41■□□□□ 0.38
RPL39-203ENST00000477403 PHF23Q9BUL5 403 aaPredicted RBP17.37■□□□□ 0.37
RPL39-203ENST00000477403 FOXD1Q16676 465 aa16.19■□□□□ 0.18
RPL39-203ENST00000477403 PLPPR3Q6T4P5 718 aa15.98■□□□□ 0.15
RPL39-203ENST00000477403 PPP6R1Q9UPN7 881 aa15.41■□□□□ 0.06
RPL39-203ENST00000477403 ADRA2BP18089 450 aa15.4■□□□□ 0.06
RPL39-203ENST00000477403 PIAS4Q8N2W9 510 aaPredicted RBP15.24■□□□□ 0.03
RPL39-203ENST00000477403 MSH5O43196 834 aa15.01□□□□□ -0.01
RPL39-203ENST00000477403 SCAF1Q9H7N4 1312 aaKnown RBP14.08□□□□□ -0.16
RPL39-203ENST00000477403 PPP4R3CPQ6ZMV5 832 aa14.06□□□□□ -0.16
RPL39-203ENST00000477403 POTEDQ86YR6 584 aa14.05□□□□□ -0.16
RPL39-203ENST00000477403 MAPK8IP2Q13387 824 aaPredicted RBP14.04□□□□□ -0.16
RPL39-203ENST00000477403 DMRT2Q9Y5R5 561 aa13.84□□□□□ -0.19
RPL39-203ENST00000477403 CNKSR2Q8WXI2 1034 aa13.7□□□□□ -0.22
RPL39-203ENST00000477403 NCBP3Q53F19 620 aaKnown RBP13.63□□□□□ -0.23
RPL39-203ENST00000477403 KCNA4P22459 653 aa13.5□□□□□ -0.25
RPL39-203ENST00000477403 RNF216Q9NWF9 866 aaPredicted RBP13.47□□□□□ -0.25
RPL39-203ENST00000477403 HOXD11P31277 338 aaPredicted RBP13.46□□□□□ -0.25
RPL39-203ENST00000477403 NPM3O75607 178 aaKnown RBP13.42□□□□□ -0.26
RPL39-203ENST00000477403 DCAF8L1A6NGE4 600 aa13.35□□□□□ -0.27
RPL39-203ENST00000477403 DNAJC5BQ9UF47 199 aa12.98□□□□□ -0.33
RPL39-203ENST00000477403 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.89□□□□□ -0.35
RPL39-203ENST00000477403 RNF39Q9H2S5 420 aa12.83□□□□□ -0.36
RPL39-203ENST00000477403 SLC4A1APQ9BWU0 796 aaKnown RBP12.82□□□□□ -0.36
RPL39-203ENST00000477403 SLC4A2P04920 1241 aa12.72□□□□□ -0.37
RPL39-203ENST00000477403 CACNB1Q02641 598 aaPredicted RBP12.7□□□□□ -0.38
RPL39-203ENST00000477403 C1QBPQ07021 282 aaKnown RBP12.66□□□□□ -0.38
RPL39-203ENST00000477403 U3KPZ7 1027 aaPredicted RBP12.63□□□□□ -0.39
RPL39-203ENST00000477403 FOXD4L1Q9NU39 408 aa12.48□□□□□ -0.41
RPL39-203ENST00000477403 MYCNP04198 464 aaPredicted RBP12.41□□□□□ -0.42
RPL39-203ENST00000477403 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.4□□□□□ -0.42
RPL39-203ENST00000477403 ZBTB22O15209 634 aa12.4□□□□□ -0.42
RPL39-203ENST00000477403 HNRNPUL2Q1KMD3 747 aaKnown RBP12.4□□□□□ -0.42
RPL39-203ENST00000477403 SPINK5Q9NQ38 1064 aaPredicted RBP12.36□□□□□ -0.43
RPL39-203ENST00000477403 CAPN15O75808 1086 aa12.35□□□□□ -0.43
RPL39-203ENST00000477403 SAMD1Q6SPF0 538 aaPredicted RBP12.34□□□□□ -0.43
RPL39-203ENST00000477403 APLP2Q06481 763 aa12.32□□□□□ -0.44
RPL39-203ENST00000477403 EHMT2Q96KQ7 1210 aa12.25□□□□□ -0.45
RPL39-203ENST00000477403 TRHP20396 242 aaPredicted RBP12.24□□□□□ -0.45
RPL39-203ENST00000477403 ZNF219Q9P2Y4 722 aaPredicted RBP12.19□□□□□ -0.46
RPL39-203ENST00000477403 CSRNP3Q8WYN3 585 aa12.15□□□□□ -0.46
RPL39-203ENST00000477403 DSG3P32926 999 aa12.14□□□□□ -0.47
RPL39-203ENST00000477403 ATF5Q9Y2D1 282 aaPredicted RBP12.1□□□□□ -0.47
RPL39-203ENST00000477403 ABCB7O75027 752 aa12.09□□□□□ -0.47
RPL39-203ENST00000477403 ATXN8OSP0DMR3 200 aa12.02□□□□□ -0.49
RPL39-203ENST00000477403 POLA2Q14181 598 aa11.96□□□□□ -0.49
RPL39-203ENST00000477403 ZBTB12Q9Y330 459 aaPredicted RBP11.73□□□□□ -0.53
RPL39-203ENST00000477403 FBLN2P98095 1184 aa11.62□□□□□ -0.55
RPL39-203ENST00000477403 RBM42Q9BTD8 480 aaKnown RBP11.58□□□□□ -0.56
RPL39-203ENST00000477403 OSCARQ8IYS5 282 aa11.57□□□□□ -0.56
RPL39-203ENST00000477403 MKRN4PQ13434 485 aaPredicted RBP11.55□□□□□ -0.56
RPL39-203ENST00000477403 SPDYE2BA6NHP3 402 aa11.4□□□□□ -0.58
RPL39-203ENST00000477403 SPDYE6P0CI01 402 aa11.4□□□□□ -0.58
RPL39-203ENST00000477403 SPDYE2Q495Y8 402 aa11.4□□□□□ -0.58
RPL39-203ENST00000477403 AKT1S1Q96B36 256 aa11.39□□□□□ -0.59
RPL39-203ENST00000477403 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
RPL39-203ENST00000477403 REM2Q8IYK8 340 aaPredicted RBP11.29□□□□□ -0.6
RPL39-203ENST00000477403 SSUH2Q9Y2M2 353 aa11.27□□□□□ -0.61
RPL39-203ENST00000477403 SPDYE4A6NLX3 237 aa11.21□□□□□ -0.61
RPL39-203ENST00000477403 CHRDL2Q6WN34 429 aa11.19□□□□□ -0.62
RPL39-203ENST00000477403 PABPN1Q86U42 306 aaKnown RBP eCLIP11.19□□□□□ -0.62
RPL39-203ENST00000477403 PITPNM1O00562 1244 aa11.17□□□□□ -0.62
RPL39-203ENST00000477403 CLEC11AQ9Y240 323 aa11.14□□□□□ -0.63
RPL39-203ENST00000477403 SPDYE1Q8NFV5 336 aaPredicted RBP11.12□□□□□ -0.63
RPL39-203ENST00000477403 POTEHQ6S545 545 aa11.09□□□□□ -0.63
RPL39-203ENST00000477403 FKBP8Q14318 412 aa11.04□□□□□ -0.64
RPL39-203ENST00000477403 PIP4P2Q8N4L2 257 aa11□□□□□ -0.65
RPL39-203ENST00000477403 FXR2P51116 673 aaKnown RBP eCLIP10.98□□□□□ -0.65
RPL39-203ENST00000477403 PRR29P0C7W0 189 aa10.97□□□□□ -0.65
RPL39-203ENST00000477403 PROM2Q8N271 834 aa10.94□□□□□ -0.66
RPL39-203ENST00000477403 STAG3Q9UJ98 1225 aa10.94□□□□□ -0.66
RPL39-203ENST00000477403 PRKAR2AP13861 404 aaKnown RBP10.9□□□□□ -0.66
RPL39-203ENST00000477403 CHADLQ6NUI6 762 aa10.87□□□□□ -0.67
RPL39-203ENST00000477403 CREBZFQ9NS37 354 aa10.76□□□□□ -0.69
RPL39-203ENST00000477403 HAX1O00165 279 aa10.74□□□□□ -0.69
RPL39-203ENST00000477403 FARP1Q9Y4F1 1045 aaPredicted RBP10.71□□□□□ -0.69
RPL39-203ENST00000477403 FBXO3Q9UK99 471 aa10.68□□□□□ -0.7
RPL39-203ENST00000477403 MIER1Q8N108 512 aa10.67□□□□□ -0.7
RPL39-203ENST00000477403 PLEKHG5O94827 1062 aa10.64□□□□□ -0.71
RPL39-203ENST00000477403 PLCD3Q8N3E9 789 aa10.64□□□□□ -0.71
RPL39-203ENST00000477403 C19orf67A6NJJ6 358 aa10.61□□□□□ -0.71
RPL39-203ENST00000477403 MNX1P50219 401 aaPredicted RBP10.6□□□□□ -0.71
RPL39-203ENST00000477403 EVX2Q03828 476 aa10.6□□□□□ -0.71
RPL39-203ENST00000477403 NPM1P06748 294 aaKnown RBP eCLIP10.59□□□□□ -0.71
RPL39-203ENST00000477403 CD44P16070 742 aaKnown RBP10.58□□□□□ -0.72
RPL39-203ENST00000477403 SP7Q8TDD2 431 aaPredicted RBP10.56□□□□□ -0.72
RPL39-203ENST00000477403 VASPP50552 380 aaPredicted RBP10.54□□□□□ -0.72
RPL39-203ENST00000477403 ZBTB47Q9UFB7 747 aaPredicted RBP10.51□□□□□ -0.73
RPL39-203ENST00000477403 PAK3O75914 559 aaPredicted RBP10.49□□□□□ -0.73
RPL39-203ENST00000477403 ZRANB1Q9UGI0 708 aa10.49□□□□□ -0.73
RPL39-203ENST00000477403 KLHL34Q8N239 644 aa10.45□□□□□ -0.74
RPL39-203ENST00000477403 TSPYL2Q9H2G4 693 aaPredicted RBP10.44□□□□□ -0.74
RPL39-203ENST00000477403 RASEFQ8IZ41 740 aa10.41□□□□□ -0.74
RPL39-203ENST00000477403 ZNF579Q8NAF0 562 aaKnown RBP10.4□□□□□ -0.74
RPL39-203ENST00000477403 GABBR2O75899 941 aa10.39□□□□□ -0.75
RPL39-203ENST00000477403 NUBP1P53384 320 aa10.39□□□□□ -0.75
RPL39-203ENST00000477403 IFNLR1Q8IU57 520 aaPredicted RBP10.38□□□□□ -0.75
RPL39-203ENST00000477403 PHF12Q96QT6 1004 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms