RNA–Protein interactions for RNA: ENST00000580888.5

EIF4A1-216, Transcript of eukaryotic translation initiation factor 4A1, humanhuman

TSL 2

Gene EIF4A1, Length 710 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EIF4A1-216ENST00000580888 NISCHQ9Y2I1 1504 aa42.3■■■■■ 4.36
EIF4A1-216ENST00000580888 CCDC180Q9P1Z9 1646 aa37.97■■■■□ 3.67
EIF4A1-216ENST00000580888 ABCC9O60706 1549 aa37.52■■■■□ 3.6
EIF4A1-216ENST00000580888 RB1CC1Q8TDY2 1594 aa35.94■■■■□ 3.34
EIF4A1-216ENST00000580888 NACADO15069 1562 aa35.78■■■■□ 3.32
EIF4A1-216ENST00000580888 MYO15BQ96JP2 1530 aa35.43■■■■□ 3.26
EIF4A1-216ENST00000580888 DCAF8L2P0C7V8 631 aa35.34■■■■□ 3.25
EIF4A1-216ENST00000580888 UNC13AQ9UPW8 1703 aa35.22■■■■□ 3.23
EIF4A1-216ENST00000580888 ZCCHC6Q5VYS8 1495 aaKnown RBP35.13■■■■□ 3.21
EIF4A1-216ENST00000580888 DCAF1Q9Y4B6 1507 aa35.06■■■■□ 3.2
EIF4A1-216ENST00000580888 DNAJC5BQ9UF47 199 aa34.97■■■■□ 3.19
EIF4A1-216ENST00000580888 BICRAQ9NZM4 1560 aa34.91■■■■□ 3.18
EIF4A1-216ENST00000580888 PABPN1Q86U42 306 aaKnown RBP eCLIP34.89■■■■□ 3.18
EIF4A1-216ENST00000580888 SHROOM4Q9ULL8 1493 aa34.53■■■■□ 3.12
EIF4A1-216ENST00000580888 SCRIBQ14160 1630 aa34.45■■■■□ 3.11
EIF4A1-216ENST00000580888 EIF4G1Q04637 1599 aaKnown RBP34■■■■□ 3.03
EIF4A1-216ENST00000580888 CC2D2AQ9P2K1 1620 aa34■■■■□ 3.03
EIF4A1-216ENST00000580888 CECR2Q9BXF3 1484 aa33.82■■■■□ 3
EIF4A1-216ENST00000580888 NCAPD3P42695 1498 aa33■■■□□ 2.87
EIF4A1-216ENST00000580888 SMARCA4P51532 1647 aa32.97■■■□□ 2.87
EIF4A1-216ENST00000580888 ATAD2BQ9ULI0 1458 aa32.91■■■□□ 2.86
EIF4A1-216ENST00000580888 SMARCA2P51531 1590 aa32.86■■■□□ 2.85
EIF4A1-216ENST00000580888 BAZ1AQ9NRL2 1556 aaPredicted RBP32.83■■■□□ 2.85
EIF4A1-216ENST00000580888 HMGXB3Q12766 1538 aa32.82■■■□□ 2.84
EIF4A1-216ENST00000580888 PEG3Q9GZU2 1588 aa32.72■■■□□ 2.83
EIF4A1-216ENST00000580888 BAZ1BQ9UIG0 1483 aaKnown RBP32.57■■■□□ 2.8
EIF4A1-216ENST00000580888 MROH2BQ7Z745 1585 aa32.56■■■□□ 2.8
EIF4A1-216ENST00000580888 ERCC6Q03468 1493 aa32.38■■■□□ 2.77
EIF4A1-216ENST00000580888 CUX2O14529 1486 aa32.35■■■□□ 2.77
EIF4A1-216ENST00000580888 NESP48681 1621 aa32.32■■■□□ 2.76
EIF4A1-216ENST00000580888 LAMC3Q9Y6N6 1575 aa32.24■■■□□ 2.75
EIF4A1-216ENST00000580888 WIZO95785 1651 aa32.21■■■□□ 2.75
EIF4A1-216ENST00000580888 THOC2Q8NI27 1593 aaKnown RBP32.06■■■□□ 2.72
EIF4A1-216ENST00000580888 KIF21AQ7Z4S6 1674 aa32.02■■■□□ 2.72
EIF4A1-216ENST00000580888 DNAJC5Q9H3Z4 198 aa31.98■■■□□ 2.71
EIF4A1-216ENST00000580888 PDS5BQ9NTI5 1447 aa31.98■■■□□ 2.71
EIF4A1-216ENST00000580888 RSF1Q96T23 1441 aaPredicted RBP31.96■■■□□ 2.71
EIF4A1-216ENST00000580888 CADPSQ9ULU8 1353 aa31.95■■■□□ 2.71
EIF4A1-216ENST00000580888 TOP2AP11388 1531 aaKnown RBP31.85■■■□□ 2.69
EIF4A1-216ENST00000580888 MRC2Q9UBG0 1479 aa31.71■■■□□ 2.67
EIF4A1-216ENST00000580888 CFTRP13569 1480 aa31.68■■■□□ 2.66
EIF4A1-216ENST00000580888 WDR62O43379 1518 aa31.67■■■□□ 2.66
EIF4A1-216ENST00000580888 CEP164Q9UPV0 1460 aa31.61■■■□□ 2.65
EIF4A1-216ENST00000580888 FANCD2Q9BXW9 1451 aa31.59■■■□□ 2.65
EIF4A1-216ENST00000580888 PRDM2Q13029 1718 aa31.53■■■□□ 2.64
EIF4A1-216ENST00000580888 CCDC88BA6NC98 1476 aa31.43■■■□□ 2.62
EIF4A1-216ENST00000580888 SUPT5HO00267 1087 aaKnown RBP31.35■■■□□ 2.61
EIF4A1-216ENST00000580888 URB2Q14146 1524 aaKnown RBP31.33■■■□□ 2.61
EIF4A1-216ENST00000580888 TOPBP1Q92547 1522 aa31.04■■■□□ 2.56
EIF4A1-216ENST00000580888 ABCC8Q09428 1581 aa31.04■■■□□ 2.56
EIF4A1-216ENST00000580888 IFT140Q96RY7 1462 aa31■■■□□ 2.55
EIF4A1-216ENST00000580888 DNMBPQ6XZF7 1577 aa30.98■■■□□ 2.55
EIF4A1-216ENST00000580888 ZNF608Q9ULD9 1512 aaPredicted RBP30.87■■■□□ 2.53
EIF4A1-216ENST00000580888 TARBP1Q13395 1621 aaKnown RBP30.8■■■□□ 2.52
EIF4A1-216ENST00000580888 OSCARQ8IYS5 282 aa30.8■■■□□ 2.52
EIF4A1-216ENST00000580888 EIF4G3O43432 1585 aaKnown RBP30.78■■■□□ 2.52
EIF4A1-216ENST00000580888 POLA1P09884 1462 aaPredicted RBP30.74■■■□□ 2.51
EIF4A1-216ENST00000580888 AQRO60306 1485 aaKnown RBP eCLIP30.6■■■□□ 2.493e-7■■■■□ 20.7
EIF4A1-216ENST00000580888 WDR97A6NE52 1622 aa30.58■■■□□ 2.49
EIF4A1-216ENST00000580888 CUX1P39880 1505 aa30.58■■■□□ 2.49
EIF4A1-216ENST00000580888 RAD54L2Q9Y4B4 1467 aa30.57■■■□□ 2.48
EIF4A1-216ENST00000580888 FGD5Q6ZNL6 1462 aa30.56■■■□□ 2.48
EIF4A1-216ENST00000580888 SOGA1O94964 1423 aa30.56■■■□□ 2.48
EIF4A1-216ENST00000580888 CHD1O14646 1710 aa30.53■■■□□ 2.48
EIF4A1-216ENST00000580888 TRIM41Q8WV44 630 aa30.53■■■□□ 2.48
EIF4A1-216ENST00000580888 RIMBP3CA6NJZ7 1639 aa30.47■■■□□ 2.47
EIF4A1-216ENST00000580888 RIMBP3BA6NNM3 1639 aa30.47■■■□□ 2.47
EIF4A1-216ENST00000580888 RIMBP3Q9UFD9 1639 aa30.47■■■□□ 2.47
EIF4A1-216ENST00000580888 TDRD9Q8NDG6 1382 aaKnown RBP30.42■■■□□ 2.46
EIF4A1-216ENST00000580888 ARHGEF11O15085 1522 aa30.37■■■□□ 2.45
EIF4A1-216ENST00000580888 SNAPC4Q5SXM2 1469 aa30.32■■■□□ 2.44
EIF4A1-216ENST00000580888 MAGI1Q96QZ7 1491 aaPredicted RBP30.31■■■□□ 2.44
EIF4A1-216ENST00000580888 GRIN2BQ13224 1484 aa30.31■■■□□ 2.44
EIF4A1-216ENST00000580888 ABCA10Q8WWZ4 1543 aa30.28■■■□□ 2.44
EIF4A1-216ENST00000580888 PBRM1Q86U86 1689 aa30.28■■■□□ 2.44
EIF4A1-216ENST00000580888 CHIC1Q5VXU3 224 aa30.28■■■□□ 2.44
EIF4A1-216ENST00000580888 ABCA5Q8WWZ7 1642 aa30.25■■■□□ 2.43
EIF4A1-216ENST00000580888 BIVM-ERCC5R4GMW8 1640 aa30.25■■■□□ 2.43
EIF4A1-216ENST00000580888 FBLN2P98095 1184 aa30.24■■■□□ 2.43
EIF4A1-216ENST00000580888 TOP2BQ02880 1626 aa30.22■■■□□ 2.43
EIF4A1-216ENST00000580888 GAPVD1Q14C86 1478 aa30.21■■■□□ 2.43
EIF4A1-216ENST00000580888 CLASP1Q7Z460 1538 aa30.19■■■□□ 2.42
EIF4A1-216ENST00000580888 SYNJ2O15056 1496 aa30.19■■■□□ 2.42
EIF4A1-216ENST00000580888 SYNJ1O43426 1573 aa30.16■■■□□ 2.42
EIF4A1-216ENST00000580888 WRNQ14191 1432 aaPredicted RBP eCLIP30.14■■■□□ 2.423e-6■■■■□ 21.9
EIF4A1-216ENST00000580888 CHMP7Q8WUX9 453 aaPredicted RBP30.12■■■□□ 2.41
EIF4A1-216ENST00000580888 ARAP1Q96P48 1450 aa30.09■■■□□ 2.41
EIF4A1-216ENST00000580888 CYB5RLQ6IPT4 315 aa30.01■■■□□ 2.39
EIF4A1-216ENST00000580888 ADAMTS12P58397 1594 aa29.98■■■□□ 2.39
EIF4A1-216ENST00000580888 GRIN2AQ12879 1464 aa29.92■■■□□ 2.38
EIF4A1-216ENST00000580888 ERICH3Q5RHP9 1530 aa29.91■■■□□ 2.38
EIF4A1-216ENST00000580888 FHAD1B1AJZ9 1412 aa29.86■■■□□ 2.37
EIF4A1-216ENST00000580888 NUP160Q12769 1436 aa29.83■■■□□ 2.37
EIF4A1-216ENST00000580888 CEP170Q5SW79 1584 aa29.81■■■□□ 2.36
EIF4A1-216ENST00000580888 SHROOM2Q13796 1616 aa29.74■■■□□ 2.35
EIF4A1-216ENST00000580888 ERCC6L2Q5T890 1561 aa29.66■■■□□ 2.34
EIF4A1-216ENST00000580888 KIF27Q86VH2 1401 aa29.55■■■□□ 2.32
EIF4A1-216ENST00000580888 TRHP20396 242 aaPredicted RBP29.55■■■□□ 2.32
EIF4A1-216ENST00000580888 CUL7Q14999 1698 aa29.55■■■□□ 2.32
EIF4A1-216ENST00000580888 RUSC2Q8N2Y8 1516 aa29.55■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms