RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 NISCHQ9Y2I1 1504 aa24.43■■□□□ 1.5
CUX1-204ENST00000393824 CCDC180Q9P1Z9 1646 aa21.26■□□□□ 0.99
CUX1-204ENST00000393824 ABCC9O60706 1549 aa20.53■□□□□ 0.88
CUX1-204ENST00000393824 ZCCHC6Q5VYS8 1495 aaKnown RBP20.47■□□□□ 0.87
CUX1-204ENST00000393824 DCAF8L2P0C7V8 631 aa20.37■□□□□ 0.85
CUX1-204ENST00000393824 DCAF1Q9Y4B6 1507 aa20.09■□□□□ 0.81
CUX1-204ENST00000393824 SHROOM4Q9ULL8 1493 aa19.95■□□□□ 0.78
CUX1-204ENST00000393824 MYO15BQ96JP2 1530 aa19.91■□□□□ 0.78
CUX1-204ENST00000393824 NACADO15069 1562 aa19.89■□□□□ 0.78
CUX1-204ENST00000393824 RB1CC1Q8TDY2 1594 aa19.78■□□□□ 0.76
CUX1-204ENST00000393824 SCRIBQ14160 1630 aa19.69■□□□□ 0.74
CUX1-204ENST00000393824 UNC13AQ9UPW8 1703 aa19.45■□□□□ 0.7
CUX1-204ENST00000393824 PABPN1Q86U42 306 aaKnown RBP eCLIP19.39■□□□□ 0.69
CUX1-204ENST00000393824 BICRAQ9NZM4 1560 aa19.32■□□□□ 0.68
CUX1-204ENST00000393824 CECR2Q9BXF3 1484 aa19.12■□□□□ 0.65
CUX1-204ENST00000393824 SUPT5HO00267 1087 aaKnown RBP19.04■□□□□ 0.64
CUX1-204ENST00000393824 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
CUX1-204ENST00000393824 RSF1Q96T23 1441 aaPredicted RBP18.92■□□□□ 0.62
CUX1-204ENST00000393824 BAZ1AQ9NRL2 1556 aaPredicted RBP18.82■□□□□ 0.6
CUX1-204ENST00000393824 SMARCA4P51532 1647 aa18.81■□□□□ 0.6
CUX1-204ENST00000393824 WIZO95785 1651 aa18.75■□□□□ 0.59
CUX1-204ENST00000393824 EIF4G1Q04637 1599 aaKnown RBP18.72■□□□□ 0.59
CUX1-204ENST00000393824 HRCP23327 699 aa18.61■□□□□ 0.57
CUX1-204ENST00000393824 ATAD2BQ9ULI0 1458 aa18.59■□□□□ 0.57
CUX1-204ENST00000393824 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
CUX1-204ENST00000393824 CC2D2AQ9P2K1 1620 aa18.51■□□□□ 0.55
CUX1-204ENST00000393824 SMARCA2P51531 1590 aa18.47■□□□□ 0.55
CUX1-204ENST00000393824 TOP2AP11388 1531 aaKnown RBP18.46■□□□□ 0.55
CUX1-204ENST00000393824 DNAJC5BQ9UF47 199 aa18.44■□□□□ 0.54
CUX1-204ENST00000393824 BAZ1BQ9UIG0 1483 aaKnown RBP18.44■□□□□ 0.54
CUX1-204ENST00000393824 NCAPD3P42695 1498 aa18.43■□□□□ 0.54
CUX1-204ENST00000393824 PELP1Q8IZL8 1130 aaKnown RBP18.36■□□□□ 0.53
CUX1-204ENST00000393824 CCDC88BA6NC98 1476 aa18.35■□□□□ 0.53
CUX1-204ENST00000393824 HMGXB3Q12766 1538 aa18.34■□□□□ 0.53
CUX1-204ENST00000393824 PCGF6Q9BYE7 350 aa18.07■□□□□ 0.48
CUX1-204ENST00000393824 CHIC1Q5VXU3 224 aa18.07■□□□□ 0.48
CUX1-204ENST00000393824 PPARGC1BQ86YN6 1023 aaKnown RBP18.04■□□□□ 0.48
CUX1-204ENST00000393824 NESP48681 1621 aa17.99■□□□□ 0.47
CUX1-204ENST00000393824 CFTRP13569 1480 aa17.98■□□□□ 0.47
CUX1-204ENST00000393824 CADPSQ9ULU8 1353 aa17.97■□□□□ 0.47
CUX1-204ENST00000393824 ABCC8Q09428 1581 aa17.94■□□□□ 0.46
CUX1-204ENST00000393824 MYT1Q01538 1121 aa17.9■□□□□ 0.46
CUX1-204ENST00000393824 TRIM41Q8WV44 630 aa17.83■□□□□ 0.44
CUX1-204ENST00000393824 LAMC3Q9Y6N6 1575 aa17.78■□□□□ 0.44
CUX1-204ENST00000393824 WRNQ14191 1432 aaPredicted RBP eCLIP17.77■□□□□ 0.442e-6■■■■■ 54.1
CUX1-204ENST00000393824 FANCD2Q9BXW9 1451 aa17.77■□□□□ 0.44
CUX1-204ENST00000393824 SYNJ1O43426 1573 aa17.75■□□□□ 0.43
CUX1-204ENST00000393824 PRDM2Q13029 1718 aa17.73■□□□□ 0.43
CUX1-204ENST00000393824 CUX1P39880 1505 aa17.7■□□□□ 0.42
CUX1-204ENST00000393824 PDS5BQ9NTI5 1447 aa17.67■□□□□ 0.42
CUX1-204ENST00000393824 KIF21AQ7Z4S6 1674 aa17.67■□□□□ 0.42
CUX1-204ENST00000393824 CEP164Q9UPV0 1460 aa17.65■□□□□ 0.42
CUX1-204ENST00000393824 TRIM26Q12899 539 aaPredicted RBP17.63■□□□□ 0.41
CUX1-204ENST00000393824 TOP2BQ02880 1626 aa17.62■□□□□ 0.41
CUX1-204ENST00000393824 FAM9AQ8IZU1 332 aaPredicted RBP17.61■□□□□ 0.41
CUX1-204ENST00000393824 URB2Q14146 1524 aaKnown RBP17.6■□□□□ 0.41
CUX1-204ENST00000393824 SOGA1O94964 1423 aa17.58■□□□□ 0.4
CUX1-204ENST00000393824 ZEB1P37275 1124 aaPredicted RBP17.57■□□□□ 0.4
CUX1-204ENST00000393824 BIVM-ERCC5R4GMW8 1640 aa17.57■□□□□ 0.4
CUX1-204ENST00000393824 RUSC2Q8N2Y8 1516 aa17.56■□□□□ 0.4
CUX1-204ENST00000393824 SCAF1Q9H7N4 1312 aaKnown RBP17.56■□□□□ 0.4
CUX1-204ENST00000393824 TOPBP1Q92547 1522 aa17.56■□□□□ 0.4
CUX1-204ENST00000393824 ERCC6Q03468 1493 aa17.53■□□□□ 0.4
CUX1-204ENST00000393824 FGD5Q6ZNL6 1462 aa17.52■□□□□ 0.4
CUX1-204ENST00000393824 DNMBPQ6XZF7 1577 aa17.52■□□□□ 0.39
CUX1-204ENST00000393824 POLA1P09884 1462 aaPredicted RBP17.48■□□□□ 0.39
CUX1-204ENST00000393824 MRC2Q9UBG0 1479 aa17.48■□□□□ 0.39
CUX1-204ENST00000393824 RAD54L2Q9Y4B4 1467 aa17.47■□□□□ 0.39
CUX1-204ENST00000393824 LOC105371045A0A1W2PR82 267 aa17.46■□□□□ 0.39
CUX1-204ENST00000393824 EHMT2Q96KQ7 1210 aa17.46■□□□□ 0.39
CUX1-204ENST00000393824 THOC2Q8NI27 1593 aaKnown RBP17.43■□□□□ 0.38
CUX1-204ENST00000393824 WDR62O43379 1518 aa17.4■□□□□ 0.38
CUX1-204ENST00000393824 CUX2O14529 1486 aa17.38■□□□□ 0.37
CUX1-204ENST00000393824 TDRD9Q8NDG6 1382 aaKnown RBP17.33■□□□□ 0.36
CUX1-204ENST00000393824 CSRNP3Q8WYN3 585 aa17.33■□□□□ 0.36
CUX1-204ENST00000393824 ABCA10Q8WWZ4 1543 aa17.31■□□□□ 0.36
CUX1-204ENST00000393824 TARBP1Q13395 1621 aaKnown RBP17.31■□□□□ 0.36
CUX1-204ENST00000393824 KIF27Q86VH2 1401 aa17.3■□□□□ 0.36
CUX1-204ENST00000393824 ZNF608Q9ULD9 1512 aaPredicted RBP17.28■□□□□ 0.36
CUX1-204ENST00000393824 EEA1Q15075 1411 aa17.27■□□□□ 0.35
CUX1-204ENST00000393824 WDR97A6NE52 1622 aa17.26■□□□□ 0.35
CUX1-204ENST00000393824 AQRO60306 1485 aaKnown RBP eCLIP17.25■□□□□ 0.354e-7■■■■□ 26.1
CUX1-204ENST00000393824 IGF1RP08069 1367 aa17.25■□□□□ 0.35
CUX1-204ENST00000393824 IFT140Q96RY7 1462 aa17.21■□□□□ 0.35
CUX1-204ENST00000393824 RAPGEF2Q9Y4G8 1499 aa17.2■□□□□ 0.34
CUX1-204ENST00000393824 ABCA5Q8WWZ7 1642 aa17.19■□□□□ 0.34
CUX1-204ENST00000393824 GAPVD1Q14C86 1478 aa17.19■□□□□ 0.34
CUX1-204ENST00000393824 PRXQ9BXM0 1461 aa17.18■□□□□ 0.34
CUX1-204ENST00000393824 ACIN1Q9UKV3 1341 aaKnown RBP17.18■□□□□ 0.34
CUX1-204ENST00000393824 CARMIL1Q5VZK9 1371 aa17.12■□□□□ 0.33
CUX1-204ENST00000393824 EIF4G3O43432 1585 aaKnown RBP17.12■□□□□ 0.33
CUX1-204ENST00000393824 KIF21BO75037 1637 aa17.11■□□□□ 0.33
CUX1-204ENST00000393824 UBTFP17480 764 aaKnown RBP17.1■□□□□ 0.33
CUX1-204ENST00000393824 GOLGA3Q08378 1498 aa17.1■□□□□ 0.33
CUX1-204ENST00000393824 ERICH3Q5RHP9 1530 aa17.07■□□□□ 0.32
CUX1-204ENST00000393824 NEUROD1Q13562 356 aa17.06■□□□□ 0.32
CUX1-204ENST00000393824 GRIN2BQ13224 1484 aa17.06■□□□□ 0.32
CUX1-204ENST00000393824 PBRM1Q86U86 1689 aa17.05■□□□□ 0.32
CUX1-204ENST00000393824 RANGAP1P46060 587 aaPredicted RBP17.03■□□□□ 0.32
CUX1-204ENST00000393824 SNAPC4Q5SXM2 1469 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms