RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 NISCHQ9Y2I1 1504 aa24.41■■□□□ 1.5
CUX1-202ENST00000292538 DCAF8L2P0C7V8 631 aa21.01■□□□□ 0.95
CUX1-202ENST00000292538 SHROOM4Q9ULL8 1493 aa20.98■□□□□ 0.95
CUX1-202ENST00000292538 CCDC180Q9P1Z9 1646 aa20.71■□□□□ 0.91
CUX1-202ENST00000292538 ZCCHC6Q5VYS8 1495 aaKnown RBP20.51■□□□□ 0.87
CUX1-202ENST00000292538 SUPT5HO00267 1087 aaKnown RBP20.43■□□□□ 0.86
CUX1-202ENST00000292538 ABCC9O60706 1549 aa20.02■□□□□ 0.79
CUX1-202ENST00000292538 DCAF1Q9Y4B6 1507 aa19.84■□□□□ 0.77
CUX1-202ENST00000292538 SCRIBQ14160 1630 aa19.67■□□□□ 0.74
CUX1-202ENST00000292538 CHIC1Q5VXU3 224 aa19.43■□□□□ 0.7
CUX1-202ENST00000292538 NACADO15069 1562 aa19.39■□□□□ 0.69
CUX1-202ENST00000292538 MYO15BQ96JP2 1530 aa19.38■□□□□ 0.69
CUX1-202ENST00000292538 RSF1Q96T23 1441 aaPredicted RBP19.25■□□□□ 0.67
CUX1-202ENST00000292538 PABPN1Q86U42 306 aaKnown RBP eCLIP19.23■□□□□ 0.67
CUX1-202ENST00000292538 RB1CC1Q8TDY2 1594 aa19.21■□□□□ 0.67
CUX1-202ENST00000292538 CECR2Q9BXF3 1484 aa19.21■□□□□ 0.66
CUX1-202ENST00000292538 MROH2BQ7Z745 1585 aa19.03■□□□□ 0.64
CUX1-202ENST00000292538 LOC105371045A0A1W2PR82 267 aa19.01■□□□□ 0.63
CUX1-202ENST00000292538 EHMT2Q96KQ7 1210 aa18.97■□□□□ 0.63
CUX1-202ENST00000292538 FAM9AQ8IZU1 332 aaPredicted RBP18.96■□□□□ 0.63
CUX1-202ENST00000292538 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
CUX1-202ENST00000292538 WIZO95785 1651 aa18.87■□□□□ 0.61
CUX1-202ENST00000292538 BAZ1AQ9NRL2 1556 aaPredicted RBP18.77■□□□□ 0.59
CUX1-202ENST00000292538 UNC13AQ9UPW8 1703 aa18.74■□□□□ 0.59
CUX1-202ENST00000292538 BICRAQ9NZM4 1560 aa18.65■□□□□ 0.58
CUX1-202ENST00000292538 SMARCA4P51532 1647 aa18.63■□□□□ 0.57
CUX1-202ENST00000292538 PCGF6Q9BYE7 350 aa18.6■□□□□ 0.57
CUX1-202ENST00000292538 CCDC88BA6NC98 1476 aa18.54■□□□□ 0.56
CUX1-202ENST00000292538 TOP2AP11388 1531 aaKnown RBP18.49■□□□□ 0.55
CUX1-202ENST00000292538 ABCC8Q09428 1581 aa18.4■□□□□ 0.54
CUX1-202ENST00000292538 SMARCA2P51531 1590 aa18.39■□□□□ 0.53
CUX1-202ENST00000292538 ATAD2BQ9ULI0 1458 aa18.35■□□□□ 0.53
CUX1-202ENST00000292538 PPARGC1BQ86YN6 1023 aaKnown RBP18.34■□□□□ 0.53
CUX1-202ENST00000292538 BAZ1BQ9UIG0 1483 aaKnown RBP18.33■□□□□ 0.53
CUX1-202ENST00000292538 SOGA1O94964 1423 aa18.21■□□□□ 0.51
CUX1-202ENST00000292538 TTBK1Q5TCY1 1321 aaPredicted RBP18.21■□□□□ 0.51
CUX1-202ENST00000292538 UBTFP17480 764 aaKnown RBP18.2■□□□□ 0.5
CUX1-202ENST00000292538 EIF4G1Q04637 1599 aaKnown RBP18.19■□□□□ 0.5
CUX1-202ENST00000292538 TRIM26Q12899 539 aaPredicted RBP18.17■□□□□ 0.5
CUX1-202ENST00000292538 RANGAP1P46060 587 aaPredicted RBP18.16■□□□□ 0.5
CUX1-202ENST00000292538 PEG3Q9GZU2 1588 aa18.16■□□□□ 0.5
CUX1-202ENST00000292538 WRNQ14191 1432 aaPredicted RBP eCLIP18.14■□□□□ 0.52e-6■■■■■ 54.1
CUX1-202ENST00000292538 CSRNP3Q8WYN3 585 aa18.13■□□□□ 0.49
CUX1-202ENST00000292538 RUSC2Q8N2Y8 1516 aa18.12■□□□□ 0.49
CUX1-202ENST00000292538 HRCP23327 699 aa18.1■□□□□ 0.49
CUX1-202ENST00000292538 NCAPD3P42695 1498 aa18.01■□□□□ 0.47
CUX1-202ENST00000292538 SYNJ1O43426 1573 aa17.95■□□□□ 0.46
CUX1-202ENST00000292538 CEP162Q5TB80 1403 aa17.89■□□□□ 0.45
CUX1-202ENST00000292538 HMGXB3Q12766 1538 aa17.87■□□□□ 0.45
CUX1-202ENST00000292538 EEA1Q15075 1411 aa17.85■□□□□ 0.45
CUX1-202ENST00000292538 TNIKQ9UKE5 1360 aa17.83■□□□□ 0.44
CUX1-202ENST00000292538 CC2D2AQ9P2K1 1620 aa17.82■□□□□ 0.44
CUX1-202ENST00000292538 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
CUX1-202ENST00000292538 GOLGA3Q08378 1498 aa17.8■□□□□ 0.44
CUX1-202ENST00000292538 CFTRP13569 1480 aa17.78■□□□□ 0.44
CUX1-202ENST00000292538 CADPSQ9ULU8 1353 aa17.76■□□□□ 0.43
CUX1-202ENST00000292538 RAPGEF2Q9Y4G8 1499 aa17.74■□□□□ 0.43
CUX1-202ENST00000292538 CEP164Q9UPV0 1460 aa17.73■□□□□ 0.43
CUX1-202ENST00000292538 CUX1P39880 1505 aa17.71■□□□□ 0.43
CUX1-202ENST00000292538 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.7■□□□□ 0.42
CUX1-202ENST00000292538 TOP2BQ02880 1626 aa17.7■□□□□ 0.42
CUX1-202ENST00000292538 APLP2Q06481 763 aa17.69■□□□□ 0.42
CUX1-202ENST00000292538 CLIP1P30622 1438 aa17.68■□□□□ 0.42
CUX1-202ENST00000292538 NESP48681 1621 aa17.65■□□□□ 0.42
CUX1-202ENST00000292538 KIF27Q86VH2 1401 aa17.63■□□□□ 0.41
CUX1-202ENST00000292538 CCER1Q8TC90 406 aaPredicted RBP17.62■□□□□ 0.41
CUX1-202ENST00000292538 CUX2O14529 1486 aa17.59■□□□□ 0.41
CUX1-202ENST00000292538 FANCD2Q9BXW9 1451 aa17.58■□□□□ 0.4
CUX1-202ENST00000292538 HNRNPUL2Q1KMD3 747 aaKnown RBP17.57■□□□□ 0.4
CUX1-202ENST00000292538 BIVM-ERCC5R4GMW8 1640 aa17.55■□□□□ 0.4
CUX1-202ENST00000292538 KIF21BO75037 1637 aa17.53■□□□□ 0.4
CUX1-202ENST00000292538 FGD5Q6ZNL6 1462 aa17.52■□□□□ 0.4
CUX1-202ENST00000292538 P3H3Q8IVL6 736 aa17.52■□□□□ 0.4
CUX1-202ENST00000292538 ZEB1P37275 1124 aaPredicted RBP17.51■□□□□ 0.39
CUX1-202ENST00000292538 ATP1B4Q9UN42 357 aaPredicted RBP17.51■□□□□ 0.39
CUX1-202ENST00000292538 IGF1RP08069 1367 aa17.49■□□□□ 0.39
CUX1-202ENST00000292538 PRXQ9BXM0 1461 aa17.49■□□□□ 0.39
CUX1-202ENST00000292538 RAD54L2Q9Y4B4 1467 aa17.49■□□□□ 0.39
CUX1-202ENST00000292538 VPS8Q8N3P4 1428 aa17.45■□□□□ 0.38
CUX1-202ENST00000292538 CARMIL1Q5VZK9 1371 aa17.45■□□□□ 0.38
CUX1-202ENST00000292538 KANK4Q5T7N3 995 aaPredicted RBP17.41■□□□□ 0.38
CUX1-202ENST00000292538 TDRD9Q8NDG6 1382 aaKnown RBP17.4■□□□□ 0.38
CUX1-202ENST00000292538 ITGAEP38570 1179 aa17.37■□□□□ 0.37
CUX1-202ENST00000292538 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
CUX1-202ENST00000292538 POLA1P09884 1462 aaPredicted RBP17.35■□□□□ 0.37
CUX1-202ENST00000292538 ERICH3Q5RHP9 1530 aa17.35■□□□□ 0.37
CUX1-202ENST00000292538 PDS5BQ9NTI5 1447 aa17.34■□□□□ 0.37
CUX1-202ENST00000292538 ARAP1Q96P48 1450 aa17.34■□□□□ 0.37
CUX1-202ENST00000292538 URB2Q14146 1524 aaKnown RBP17.3■□□□□ 0.36
CUX1-202ENST00000292538 PRDM2Q13029 1718 aa17.29■□□□□ 0.36
CUX1-202ENST00000292538 DNMBPQ6XZF7 1577 aa17.28■□□□□ 0.36
CUX1-202ENST00000292538 ARHGAP35Q9NRY4 1499 aa17.26■□□□□ 0.35
CUX1-202ENST00000292538 LAMC3Q9Y6N6 1575 aa17.25■□□□□ 0.35
CUX1-202ENST00000292538 ABCA10Q8WWZ4 1543 aa17.21■□□□□ 0.35
CUX1-202ENST00000292538 FHOD3Q2V2M9 1422 aa17.17■□□□□ 0.34
CUX1-202ENST00000292538 ARID3CA6NKF2 412 aa17.17■□□□□ 0.34
CUX1-202ENST00000292538 GAPVD1Q14C86 1478 aa17.15■□□□□ 0.34
CUX1-202ENST00000292538 FAM50AQ14320 339 aaKnown RBP17.15■□□□□ 0.34
CUX1-202ENST00000292538 AQRO60306 1485 aaKnown RBP eCLIP17.15■□□□□ 0.344e-7■■■■□ 26.1
CUX1-202ENST00000292538 KIF21AQ7Z4S6 1674 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms