RNA–Protein interactions for RNA: ENST00000468844.1

RPL39-202, Transcript of ribosomal protein L39, humanhuman

TSL 1 (best)

Gene RPL39, Length 1,915 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39-202ENST00000468844 NISCHQ9Y2I1 1504 aa41.04■■■■■ 4.16
RPL39-202ENST00000468844 CCDC180Q9P1Z9 1646 aa36.15■■■■□ 3.38
RPL39-202ENST00000468844 ABCC9O60706 1549 aa34.51■■■■□ 3.12
RPL39-202ENST00000468844 ZCCHC6Q5VYS8 1495 aaKnown RBP34.39■■■■□ 3.1
RPL39-202ENST00000468844 DCAF1Q9Y4B6 1507 aa33.96■■■■□ 3.03
RPL39-202ENST00000468844 DCAF8L2P0C7V8 631 aa33.89■■■■□ 3.02
RPL39-202ENST00000468844 MYO15BQ96JP2 1530 aa33.76■■■■□ 3
RPL39-202ENST00000468844 NACADO15069 1562 aa33.71■■■□□ 2.99
RPL39-202ENST00000468844 RB1CC1Q8TDY2 1594 aa33.55■■■□□ 2.96
RPL39-202ENST00000468844 SCRIBQ14160 1630 aa33.09■■■□□ 2.89
RPL39-202ENST00000468844 UNC13AQ9UPW8 1703 aa33.04■■■□□ 2.88
RPL39-202ENST00000468844 SHROOM4Q9ULL8 1493 aa32.98■■■□□ 2.87
RPL39-202ENST00000468844 BICRAQ9NZM4 1560 aa32.58■■■□□ 2.81
RPL39-202ENST00000468844 PABPN1Q86U42 306 aaKnown RBP eCLIP32.36■■■□□ 2.77
RPL39-202ENST00000468844 CECR2Q9BXF3 1484 aa31.9■■■□□ 2.7
RPL39-202ENST00000468844 BAZ1AQ9NRL2 1556 aaPredicted RBP31.75■■■□□ 2.67
RPL39-202ENST00000468844 SMARCA4P51532 1647 aa31.72■■■□□ 2.67
RPL39-202ENST00000468844 MROH2BQ7Z745 1585 aa31.68■■■□□ 2.66
RPL39-202ENST00000468844 EIF4G1Q04637 1599 aaKnown RBP31.63■■■□□ 2.65
RPL39-202ENST00000468844 RSF1Q96T23 1441 aaPredicted RBP31.58■■■□□ 2.65
RPL39-202ENST00000468844 WIZO95785 1651 aa31.46■■■□□ 2.63
RPL39-202ENST00000468844 SUPT5HO00267 1087 aaKnown RBP31.43■■■□□ 2.62
RPL39-202ENST00000468844 PEG3Q9GZU2 1588 aa31.36■■■□□ 2.61
RPL39-202ENST00000468844 CC2D2AQ9P2K1 1620 aa31.3■■■□□ 2.6
RPL39-202ENST00000468844 SMARCA2P51531 1590 aa31.25■■■□□ 2.59
RPL39-202ENST00000468844 ATAD2BQ9ULI0 1458 aa31.25■■■□□ 2.59
RPL39-202ENST00000468844 TOP2AP11388 1531 aaKnown RBP31.07■■■□□ 2.56
RPL39-202ENST00000468844 NCAPD3P42695 1498 aa31.07■■■□□ 2.56
RPL39-202ENST00000468844 HMGXB3Q12766 1538 aa31.05■■■□□ 2.56
RPL39-202ENST00000468844 BAZ1BQ9UIG0 1483 aaKnown RBP31.04■■■□□ 2.56
RPL39-202ENST00000468844 DNAJC5BQ9UF47 199 aa30.87■■■□□ 2.53
RPL39-202ENST00000468844 CCDC88BA6NC98 1476 aa30.7■■■□□ 2.5
RPL39-202ENST00000468844 PRDM2Q13029 1718 aa30.27■■■□□ 2.44
RPL39-202ENST00000468844 CFTRP13569 1480 aa30.24■■■□□ 2.43
RPL39-202ENST00000468844 CADPSQ9ULU8 1353 aa30.2■■■□□ 2.43
RPL39-202ENST00000468844 LAMC3Q9Y6N6 1575 aa30.17■■■□□ 2.42
RPL39-202ENST00000468844 NESP48681 1621 aa30.16■■■□□ 2.42
RPL39-202ENST00000468844 ABCC8Q09428 1581 aa29.93■■■□□ 2.38
RPL39-202ENST00000468844 KIF21AQ7Z4S6 1674 aa29.93■■■□□ 2.38
RPL39-202ENST00000468844 FANCD2Q9BXW9 1451 aa29.9■■■□□ 2.38
RPL39-202ENST00000468844 PDS5BQ9NTI5 1447 aa29.86■■■□□ 2.37
RPL39-202ENST00000468844 CHIC1Q5VXU3 224 aa29.83■■■□□ 2.37
RPL39-202ENST00000468844 CEP164Q9UPV0 1460 aa29.77■■■□□ 2.36
RPL39-202ENST00000468844 WRNQ14191 1432 aaPredicted RBP eCLIP29.74■■■□□ 2.35
RPL39-202ENST00000468844 SYNJ1O43426 1573 aa29.73■■■□□ 2.35
RPL39-202ENST00000468844 BIVM-ERCC5R4GMW8 1640 aa29.67■■■□□ 2.34
RPL39-202ENST00000468844 CUX1P39880 1505 aa29.66■■■□□ 2.34
RPL39-202ENST00000468844 TOP2BQ02880 1626 aa29.65■■■□□ 2.34
RPL39-202ENST00000468844 ERCC6Q03468 1493 aa29.63■■■□□ 2.33
RPL39-202ENST00000468844 TRIM41Q8WV44 630 aa29.61■■■□□ 2.33
RPL39-202ENST00000468844 DNMBPQ6XZF7 1577 aa29.59■■■□□ 2.33
RPL39-202ENST00000468844 URB2Q14146 1524 aaKnown RBP29.58■■■□□ 2.33
RPL39-202ENST00000468844 THOC2Q8NI27 1593 aaKnown RBP29.54■■■□□ 2.32
RPL39-202ENST00000468844 TOPBP1Q92547 1522 aa29.54■■■□□ 2.32
RPL39-202ENST00000468844 MRC2Q9UBG0 1479 aa29.53■■■□□ 2.32
RPL39-202ENST00000468844 WDR62O43379 1518 aa29.46■■■□□ 2.31
RPL39-202ENST00000468844 FGD5Q6ZNL6 1462 aa29.41■■■□□ 2.3
RPL39-202ENST00000468844 POLA1P09884 1462 aaPredicted RBP29.36■■■□□ 2.29
RPL39-202ENST00000468844 WDR97A6NE52 1622 aa29.23■■■□□ 2.27
RPL39-202ENST00000468844 RAD54L2Q9Y4B4 1467 aa29.22■■■□□ 2.27
RPL39-202ENST00000468844 TARBP1Q13395 1621 aaKnown RBP29.21■■■□□ 2.27
RPL39-202ENST00000468844 CUX2O14529 1486 aa29.2■■■□□ 2.27
RPL39-202ENST00000468844 SOGA1O94964 1423 aa29.19■■■□□ 2.26
RPL39-202ENST00000468844 ABCA10Q8WWZ4 1543 aa29.14■■■□□ 2.26
RPL39-202ENST00000468844 RUSC2Q8N2Y8 1516 aa29.13■■■□□ 2.25
RPL39-202ENST00000468844 IFT140Q96RY7 1462 aa29.08■■■□□ 2.25
RPL39-202ENST00000468844 ABCA5Q8WWZ7 1642 aa29.02■■■□□ 2.24
RPL39-202ENST00000468844 FAM9AQ8IZU1 332 aaPredicted RBP29.02■■■□□ 2.24
RPL39-202ENST00000468844 KIF27Q86VH2 1401 aa29.02■■■□□ 2.24
RPL39-202ENST00000468844 EEA1Q15075 1411 aa29.01■■■□□ 2.24
RPL39-202ENST00000468844 ZNF608Q9ULD9 1512 aaPredicted RBP28.96■■■□□ 2.23
RPL39-202ENST00000468844 TDRD9Q8NDG6 1382 aaKnown RBP28.95■■■□□ 2.22
RPL39-202ENST00000468844 EIF4G3O43432 1585 aaKnown RBP28.93■■■□□ 2.22
RPL39-202ENST00000468844 PBRM1Q86U86 1689 aa28.92■■■□□ 2.22
RPL39-202ENST00000468844 GAPVD1Q14C86 1478 aa28.9■■■□□ 2.22
RPL39-202ENST00000468844 AQRO60306 1485 aaKnown RBP eCLIP28.88■■■□□ 2.213e-9■■■■■ 39.9
RPL39-202ENST00000468844 CSRNP3Q8WYN3 585 aa28.85■■■□□ 2.21
RPL39-202ENST00000468844 ERICH3Q5RHP9 1530 aa28.81■■■□□ 2.2
RPL39-202ENST00000468844 IGF1RP08069 1367 aa28.8■■■□□ 2.2
RPL39-202ENST00000468844 CUL7Q14999 1698 aa28.77■■■□□ 2.2
RPL39-202ENST00000468844 KIF21BO75037 1637 aa28.76■■■□□ 2.2
RPL39-202ENST00000468844 GRIN2BQ13224 1484 aa28.75■■■□□ 2.19
RPL39-202ENST00000468844 PRXQ9BXM0 1461 aa28.72■■■□□ 2.19
RPL39-202ENST00000468844 ADAMTS12P58397 1594 aa28.66■■■□□ 2.18
RPL39-202ENST00000468844 LOC105371045A0A1W2PR82 267 aa28.65■■■□□ 2.18
RPL39-202ENST00000468844 CARMIL1Q5VZK9 1371 aa28.64■■■□□ 2.18
RPL39-202ENST00000468844 RAPGEF2Q9Y4G8 1499 aa28.64■■■□□ 2.18
RPL39-202ENST00000468844 SNAPC4Q5SXM2 1469 aa28.63■■■□□ 2.17
RPL39-202ENST00000468844 EHMT2Q96KQ7 1210 aa28.62■■■□□ 2.17
RPL39-202ENST00000468844 GOLGA3Q08378 1498 aa28.61■■■□□ 2.17
RPL39-202ENST00000468844 MAGI1Q96QZ7 1491 aaPredicted RBP28.59■■■□□ 2.17
RPL39-202ENST00000468844 FHAD1B1AJZ9 1412 aa28.55■■■□□ 2.16
RPL39-202ENST00000468844 SYNJ2O15056 1496 aa28.48■■■□□ 2.15
RPL39-202ENST00000468844 CHD1O14646 1710 aa28.46■■■□□ 2.15
RPL39-202ENST00000468844 CTTNBP2Q8WZ74 1663 aa28.44■■■□□ 2.14
RPL39-202ENST00000468844 GRIN2AQ12879 1464 aa28.42■■■□□ 2.14
RPL39-202ENST00000468844 UBTFP17480 764 aaKnown RBP28.41■■■□□ 2.14
RPL39-202ENST00000468844 TNIKQ9UKE5 1360 aa28.38■■■□□ 2.13
RPL39-202ENST00000468844 CHMP7Q8WUX9 453 aaPredicted RBP28.34■■■□□ 2.13
RPL39-202ENST00000468844 FBLN2P98095 1184 aa28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms