RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 NISCHQ9Y2I1 1504 aa20.59■□□□□ 0.89
CUX1-206ENST00000437600 CCDC180Q9P1Z9 1646 aa17.89■□□□□ 0.45
CUX1-206ENST00000437600 DCAF8L2P0C7V8 631 aa17.42■□□□□ 0.38
CUX1-206ENST00000437600 ABCC9O60706 1549 aa17.37■□□□□ 0.37
CUX1-206ENST00000437600 ZCCHC6Q5VYS8 1495 aaKnown RBP17.24■□□□□ 0.35
CUX1-206ENST00000437600 SHROOM4Q9ULL8 1493 aa17.23■□□□□ 0.35
CUX1-206ENST00000437600 DCAF1Q9Y4B6 1507 aa16.83■□□□□ 0.28
CUX1-206ENST00000437600 SUPT5HO00267 1087 aaKnown RBP16.77■□□□□ 0.27
CUX1-206ENST00000437600 NACADO15069 1562 aa16.72■□□□□ 0.27
CUX1-206ENST00000437600 SCRIBQ14160 1630 aa16.71■□□□□ 0.27
CUX1-206ENST00000437600 RB1CC1Q8TDY2 1594 aa16.66■□□□□ 0.26
CUX1-206ENST00000437600 MYO15BQ96JP2 1530 aa16.64■□□□□ 0.25
CUX1-206ENST00000437600 UNC13AQ9UPW8 1703 aa16.47■□□□□ 0.23
CUX1-206ENST00000437600 PABPN1Q86U42 306 aaKnown RBP eCLIP16.44■□□□□ 0.22
CUX1-206ENST00000437600 BICRAQ9NZM4 1560 aa16.24■□□□□ 0.19
CUX1-206ENST00000437600 CECR2Q9BXF3 1484 aa16.16■□□□□ 0.18
CUX1-206ENST00000437600 CHIC1Q5VXU3 224 aa16.03■□□□□ 0.16
CUX1-206ENST00000437600 MROH2BQ7Z745 1585 aa16■□□□□ 0.15
CUX1-206ENST00000437600 RSF1Q96T23 1441 aaPredicted RBP15.97■□□□□ 0.15
CUX1-206ENST00000437600 WIZO95785 1651 aa15.9■□□□□ 0.14
CUX1-206ENST00000437600 SMARCA4P51532 1647 aa15.88■□□□□ 0.13
CUX1-206ENST00000437600 BAZ1AQ9NRL2 1556 aaPredicted RBP15.87■□□□□ 0.13
CUX1-206ENST00000437600 LOC105371045A0A1W2PR82 267 aa15.78■□□□□ 0.12
CUX1-206ENST00000437600 EIF4G1Q04637 1599 aaKnown RBP15.77■□□□□ 0.12
CUX1-206ENST00000437600 ATAD2BQ9ULI0 1458 aa15.65■□□□□ 0.1
CUX1-206ENST00000437600 EHMT2Q96KQ7 1210 aa15.65■□□□□ 0.1
CUX1-206ENST00000437600 CC2D2AQ9P2K1 1620 aa15.62■□□□□ 0.09
CUX1-206ENST00000437600 PCGF6Q9BYE7 350 aa15.59■□□□□ 0.09
CUX1-206ENST00000437600 BAZ1BQ9UIG0 1483 aaKnown RBP15.58■□□□□ 0.08
CUX1-206ENST00000437600 FAM9AQ8IZU1 332 aaPredicted RBP15.58■□□□□ 0.08
CUX1-206ENST00000437600 TOP2AP11388 1531 aaKnown RBP15.57■□□□□ 0.08
CUX1-206ENST00000437600 SMARCA2P51531 1590 aa15.56■□□□□ 0.08
CUX1-206ENST00000437600 PEG3Q9GZU2 1588 aa15.56■□□□□ 0.08
CUX1-206ENST00000437600 DNAJC5BQ9UF47 199 aa15.53■□□□□ 0.08
CUX1-206ENST00000437600 CCDC88BA6NC98 1476 aa15.51■□□□□ 0.07
CUX1-206ENST00000437600 TRIM41Q8WV44 630 aa15.49■□□□□ 0.07
CUX1-206ENST00000437600 NCAPD3P42695 1498 aa15.46■□□□□ 0.07
CUX1-206ENST00000437600 HMGXB3Q12766 1538 aa15.4■□□□□ 0.06
CUX1-206ENST00000437600 PPARGC1BQ86YN6 1023 aaKnown RBP15.28■□□□□ 0.04
CUX1-206ENST00000437600 HRCP23327 699 aa15.27■□□□□ 0.03
CUX1-206ENST00000437600 ABCC8Q09428 1581 aa15.26■□□□□ 0.03
CUX1-206ENST00000437600 NESP48681 1621 aa15.22■□□□□ 0.03
CUX1-206ENST00000437600 CADPSQ9ULU8 1353 aa15.13■□□□□ 0.01
CUX1-206ENST00000437600 CFTRP13569 1480 aa15.12■□□□□ 0.01
CUX1-206ENST00000437600 TRIM26Q12899 539 aaPredicted RBP15.09■□□□□ 0.01
CUX1-206ENST00000437600 TTBK1Q5TCY1 1321 aaPredicted RBP15.04■□□□□ -0
CUX1-206ENST00000437600 WRNQ14191 1432 aaPredicted RBP eCLIP15.03■□□□□ -02e-6■■■■■ 54.1
CUX1-206ENST00000437600 SYNJ1O43426 1573 aa15.03■□□□□ -0
CUX1-206ENST00000437600 SOGA1O94964 1423 aa15.01□□□□□ -0.01
CUX1-206ENST00000437600 PRDM2Q13029 1718 aa15□□□□□ -0.01
CUX1-206ENST00000437600 FANCD2Q9BXW9 1451 aa15□□□□□ -0.01
CUX1-206ENST00000437600 RUSC2Q8N2Y8 1516 aa14.98□□□□□ -0.01
CUX1-206ENST00000437600 LAMC3Q9Y6N6 1575 aa14.97□□□□□ -0.01
CUX1-206ENST00000437600 KIF21AQ7Z4S6 1674 aa14.96□□□□□ -0.01
CUX1-206ENST00000437600 CUX1P39880 1505 aa14.94□□□□□ -0.02
CUX1-206ENST00000437600 CEP164Q9UPV0 1460 aa14.89□□□□□ -0.03
CUX1-206ENST00000437600 PDS5BQ9NTI5 1447 aa14.88□□□□□ -0.03
CUX1-206ENST00000437600 TOP2BQ02880 1626 aa14.87□□□□□ -0.03
CUX1-206ENST00000437600 CSRNP3Q8WYN3 585 aa14.87□□□□□ -0.03
CUX1-206ENST00000437600 UBTFP17480 764 aaKnown RBP14.87□□□□□ -0.03
CUX1-206ENST00000437600 ERCC6Q03468 1493 aa14.84□□□□□ -0.03
CUX1-206ENST00000437600 URB2Q14146 1524 aaKnown RBP14.84□□□□□ -0.03
CUX1-206ENST00000437600 BIVM-ERCC5R4GMW8 1640 aa14.84□□□□□ -0.03
CUX1-206ENST00000437600 RANGAP1P46060 587 aaPredicted RBP14.83□□□□□ -0.04
CUX1-206ENST00000437600 TOPBP1Q92547 1522 aa14.81□□□□□ -0.04
CUX1-206ENST00000437600 FGD5Q6ZNL6 1462 aa14.81□□□□□ -0.04
CUX1-206ENST00000437600 RAD54L2Q9Y4B4 1467 aa14.79□□□□□ -0.04
CUX1-206ENST00000437600 DNMBPQ6XZF7 1577 aa14.77□□□□□ -0.05
CUX1-206ENST00000437600 POLA1P09884 1462 aaPredicted RBP14.75□□□□□ -0.05
CUX1-206ENST00000437600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.75□□□□□ -0.05
CUX1-206ENST00000437600 MRC2Q9UBG0 1479 aa14.72□□□□□ -0.05
CUX1-206ENST00000437600 CUX2O14529 1486 aa14.71□□□□□ -0.05
CUX1-206ENST00000437600 EEA1Q15075 1411 aa14.69□□□□□ -0.06
CUX1-206ENST00000437600 CEP162Q5TB80 1403 aa14.69□□□□□ -0.06
CUX1-206ENST00000437600 TDRD9Q8NDG6 1382 aaKnown RBP14.68□□□□□ -0.06
CUX1-206ENST00000437600 THOC2Q8NI27 1593 aaKnown RBP14.66□□□□□ -0.06
CUX1-206ENST00000437600 PELP1Q8IZL8 1130 aaKnown RBP14.66□□□□□ -0.06
CUX1-206ENST00000437600 GOLGA3Q08378 1498 aa14.65□□□□□ -0.06
CUX1-206ENST00000437600 TNIKQ9UKE5 1360 aa14.64□□□□□ -0.07
CUX1-206ENST00000437600 RAPGEF2Q9Y4G8 1499 aa14.64□□□□□ -0.07
CUX1-206ENST00000437600 KIF27Q86VH2 1401 aa14.63□□□□□ -0.07
CUX1-206ENST00000437600 WDR62O43379 1518 aa14.62□□□□□ -0.07
CUX1-206ENST00000437600 CCER1Q8TC90 406 aaPredicted RBP14.61□□□□□ -0.07
CUX1-206ENST00000437600 ZNF608Q9ULD9 1512 aaPredicted RBP14.6□□□□□ -0.07
CUX1-206ENST00000437600 AQRO60306 1485 aaKnown RBP eCLIP14.6□□□□□ -0.074e-7■■■■□ 26.1
CUX1-206ENST00000437600 TARBP1Q13395 1621 aaKnown RBP14.58□□□□□ -0.08
CUX1-206ENST00000437600 ABCA10Q8WWZ4 1543 aa14.58□□□□□ -0.08
CUX1-206ENST00000437600 WDR97A6NE52 1622 aa14.56□□□□□ -0.08
CUX1-206ENST00000437600 IGF1RP08069 1367 aa14.55□□□□□ -0.08
CUX1-206ENST00000437600 ZEB1P37275 1124 aaPredicted RBP14.54□□□□□ -0.08
CUX1-206ENST00000437600 CLIP1P30622 1438 aa14.52□□□□□ -0.09
CUX1-206ENST00000437600 GAPVD1Q14C86 1478 aa14.52□□□□□ -0.09
CUX1-206ENST00000437600 KIF21BO75037 1637 aa14.52□□□□□ -0.09
CUX1-206ENST00000437600 ABCA5Q8WWZ7 1642 aa14.49□□□□□ -0.09
CUX1-206ENST00000437600 CARMIL1Q5VZK9 1371 aa14.49□□□□□ -0.09
CUX1-206ENST00000437600 HNRNPUL2Q1KMD3 747 aaKnown RBP14.49□□□□□ -0.09
CUX1-206ENST00000437600 IFT140Q96RY7 1462 aa14.48□□□□□ -0.09
CUX1-206ENST00000437600 PRXQ9BXM0 1461 aa14.48□□□□□ -0.09
CUX1-206ENST00000437600 EIF4G3O43432 1585 aaKnown RBP14.46□□□□□ -0.09
CUX1-206ENST00000437600 PBRM1Q86U86 1689 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms