Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAV40A0A0B4J280 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.97■□□□□ 0.95
TRAV40A0A0B4J280 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
TRAV40A0A0B4J280 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
TRAV40A0A0B4J280 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV40A0A0B4J280 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV40A0A0B4J280 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.95■□□□□ 0.94
TRAV40A0A0B4J280 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC20.95■□□□□ 0.94
TRAV40A0A0B4J280 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.94■□□□□ 0.94
TRAV40A0A0B4J280 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV40A0A0B4J280 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV40A0A0B4J280 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
TRAV40A0A0B4J280 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV40A0A0B4J280 ST7-AS1-201ENST00000456775 1889 ntBASIC20.92■□□□□ 0.94
TRAV40A0A0B4J280 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV40A0A0B4J280 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TRAV40A0A0B4J280 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
TRAV40A0A0B4J280 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV40A0A0B4J280 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAV40A0A0B4J280 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.91■□□□□ 0.94
TRAV40A0A0B4J280 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.91■□□□□ 0.94
TRAV40A0A0B4J280 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.91■□□□□ 0.94
TRAV40A0A0B4J280 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAV40A0A0B4J280 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TRAV40A0A0B4J280 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.9■□□□□ 0.94
TRAV40A0A0B4J280 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAV40A0A0B4J280 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAV40A0A0B4J280 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV40A0A0B4J280 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV40A0A0B4J280 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV40A0A0B4J280 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC20.88■□□□□ 0.93
TRAV40A0A0B4J280 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV40A0A0B4J280 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.88■□□□□ 0.93
TRAV40A0A0B4J280 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.88■□□□□ 0.93
TRAV40A0A0B4J280 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
TRAV40A0A0B4J280 AC110285.7-201ENST00000624417 1536 ntBASIC20.88■□□□□ 0.93
TRAV40A0A0B4J280 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
TRAV40A0A0B4J280 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV40A0A0B4J280 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV40A0A0B4J280 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
TRAV40A0A0B4J280 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC20.87■□□□□ 0.93
TRAV40A0A0B4J280 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRAV40A0A0B4J280 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV40A0A0B4J280 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 AC008813.1-201ENST00000536597 885 ntBASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV40A0A0B4J280 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV40A0A0B4J280 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.85■□□□□ 0.93
TRAV40A0A0B4J280 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV40A0A0B4J280 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
TRAV40A0A0B4J280 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
TRAV40A0A0B4J280 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRAV40A0A0B4J280 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
TRAV40A0A0B4J280 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV40A0A0B4J280 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV40A0A0B4J280 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV40A0A0B4J280 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV40A0A0B4J280 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.81■□□□□ 0.92
TRAV40A0A0B4J280 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV40A0A0B4J280 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.81■□□□□ 0.92
TRAV40A0A0B4J280 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV40A0A0B4J280 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TRAV40A0A0B4J280 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
TRAV40A0A0B4J280 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.81■□□□□ 0.92
TRAV40A0A0B4J280 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV40A0A0B4J280 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV40A0A0B4J280 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV40A0A0B4J280 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV40A0A0B4J280 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV40A0A0B4J280 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms