Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK1Q9Y566 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK1Q9Y566 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK1Q9Y566 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.74■■□□□ 1.39
SHANK1Q9Y566 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.74■■□□□ 1.39
SHANK1Q9Y566 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SHANK1Q9Y566 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SHANK1Q9Y566 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
SHANK1Q9Y566 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SHANK1Q9Y566 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.72■■□□□ 1.39
SHANK1Q9Y566 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK1Q9Y566 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK1Q9Y566 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.7■■□□□ 1.38
SHANK1Q9Y566 RNF126P1-201ENST00000567452 1320 ntBASIC23.7■■□□□ 1.38
SHANK1Q9Y566 ST7-205ENST00000393446 2114 ntTSL 5 BASIC23.69■■□□□ 1.38
SHANK1Q9Y566 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHANK1Q9Y566 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.68■■□□□ 1.38
SHANK1Q9Y566 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC23.68■■□□□ 1.38
SHANK1Q9Y566 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SHANK1Q9Y566 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.68■■□□□ 1.38
SHANK1Q9Y566 ST7-202ENST00000323984 2142 ntTSL 5 BASIC23.67■■□□□ 1.38
SHANK1Q9Y566 ST7-207ENST00000393449 2127 ntTSL 5 BASIC23.67■■□□□ 1.38
SHANK1Q9Y566 LINC00273-201ENST00000539813 1452 ntBASIC23.67■■□□□ 1.38
SHANK1Q9Y566 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK1Q9Y566 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.67■■□□□ 1.38
SHANK1Q9Y566 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
SHANK1Q9Y566 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.67■■□□□ 1.38
SHANK1Q9Y566 NTF6A-201ENST00000591175 560 ntBASIC23.67■■□□□ 1.38
SHANK1Q9Y566 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
SHANK1Q9Y566 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SHANK1Q9Y566 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SHANK1Q9Y566 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC23.65■■□□□ 1.38
SHANK1Q9Y566 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
SHANK1Q9Y566 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
SHANK1Q9Y566 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SHANK1Q9Y566 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SHANK1Q9Y566 AC012354.3-201ENST00000623734 483 ntBASIC23.64■■□□□ 1.37
SHANK1Q9Y566 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.63■■□□□ 1.37
SHANK1Q9Y566 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
SHANK1Q9Y566 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SHANK1Q9Y566 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SHANK1Q9Y566 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.62■■□□□ 1.37
SHANK1Q9Y566 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SHANK1Q9Y566 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SHANK1Q9Y566 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
SHANK1Q9Y566 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHANK1Q9Y566 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHANK1Q9Y566 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SHANK1Q9Y566 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHANK1Q9Y566 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.58■■□□□ 1.37
SHANK1Q9Y566 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SHANK1Q9Y566 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
SHANK1Q9Y566 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.57■■□□□ 1.36
SHANK1Q9Y566 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
SHANK1Q9Y566 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK1Q9Y566 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK1Q9Y566 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
SHANK1Q9Y566 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.56■■□□□ 1.36
SHANK1Q9Y566 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
SHANK1Q9Y566 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.56■■□□□ 1.36
SHANK1Q9Y566 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
SHANK1Q9Y566 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SHANK1Q9Y566 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK1Q9Y566 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK1Q9Y566 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK1Q9Y566 AC120057.4-201ENST00000624722 1615 ntBASIC23.54■■□□□ 1.36
SHANK1Q9Y566 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK1Q9Y566 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK1Q9Y566 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK1Q9Y566 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK1Q9Y566 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.53■■□□□ 1.36
SHANK1Q9Y566 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.53■■□□□ 1.36
SHANK1Q9Y566 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK1Q9Y566 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK1Q9Y566 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK1Q9Y566 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK1Q9Y566 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK1Q9Y566 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
SHANK1Q9Y566 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
SHANK1Q9Y566 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK1Q9Y566 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK1Q9Y566 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK1Q9Y566 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK1Q9Y566 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK1Q9Y566 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.5■■□□□ 1.35
SHANK1Q9Y566 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK1Q9Y566 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.49■■□□□ 1.35
SHANK1Q9Y566 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC23.48■■□□□ 1.35
SHANK1Q9Y566 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SHANK1Q9Y566 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
SHANK1Q9Y566 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
SHANK1Q9Y566 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SHANK1Q9Y566 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.48■■□□□ 1.35
SHANK1Q9Y566 AC022413.1-201ENST00000624602 984 ntBASIC23.48■■□□□ 1.35
SHANK1Q9Y566 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.48■■□□□ 1.35
SHANK1Q9Y566 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SHANK1Q9Y566 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
SHANK1Q9Y566 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SHANK1Q9Y566 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SHANK1Q9Y566 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms