Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.77■■■□□ 2.52
RNF41Q9H4P4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.76■■■□□ 2.52
RNF41Q9H4P4 ABHD17AP4-201ENST00000411545 909 ntBASIC30.76■■■□□ 2.51
RNF41Q9H4P4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.76■■■□□ 2.51
RNF41Q9H4P4 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
RNF41Q9H4P4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
RNF41Q9H4P4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
RNF41Q9H4P4 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
RNF41Q9H4P4 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.75■■■□□ 2.51
RNF41Q9H4P4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
RNF41Q9H4P4 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.75■■■□□ 2.51
RNF41Q9H4P4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
RNF41Q9H4P4 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
RNF41Q9H4P4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.72■■■□□ 2.51
RNF41Q9H4P4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.72■■■□□ 2.51
RNF41Q9H4P4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.71■■■□□ 2.51
RNF41Q9H4P4 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
RNF41Q9H4P4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.71■■■□□ 2.51
RNF41Q9H4P4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
RNF41Q9H4P4 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
RNF41Q9H4P4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
RNF41Q9H4P4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.7■■■□□ 2.51
RNF41Q9H4P4 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
RNF41Q9H4P4 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.7■■■□□ 2.5
RNF41Q9H4P4 LINC00273-201ENST00000539813 1452 ntBASIC30.7■■■□□ 2.5
RNF41Q9H4P4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
RNF41Q9H4P4 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RNF41Q9H4P4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.68■■■□□ 2.5
RNF41Q9H4P4 ZNRF2P2-203ENST00000454624 420 ntBASIC30.68■■■□□ 2.5
RNF41Q9H4P4 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RNF41Q9H4P4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
RNF41Q9H4P4 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RNF41Q9H4P4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.67■■■□□ 2.5
RNF41Q9H4P4 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
RNF41Q9H4P4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
RNF41Q9H4P4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.67■■■□□ 2.5
RNF41Q9H4P4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
RNF41Q9H4P4 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
RNF41Q9H4P4 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
RNF41Q9H4P4 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
RNF41Q9H4P4 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RNF41Q9H4P4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
RNF41Q9H4P4 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
RNF41Q9H4P4 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RNF41Q9H4P4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.63■■■□□ 2.49
RNF41Q9H4P4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RNF41Q9H4P4 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
RNF41Q9H4P4 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.62■■■□□ 2.49
RNF41Q9H4P4 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
RNF41Q9H4P4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
RNF41Q9H4P4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.61■■■□□ 2.49
RNF41Q9H4P4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.6■■■□□ 2.49
RNF41Q9H4P4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.6■■■□□ 2.49
RNF41Q9H4P4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.6■■■□□ 2.49
RNF41Q9H4P4 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RNF41Q9H4P4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RNF41Q9H4P4 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RNF41Q9H4P4 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
RNF41Q9H4P4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.58■■■□□ 2.49
RNF41Q9H4P4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.58■■■□□ 2.49
RNF41Q9H4P4 LINC01971-201ENST00000617888 1048 ntBASIC30.58■■■□□ 2.49
RNF41Q9H4P4 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
RNF41Q9H4P4 AP004833.2-201ENST00000532228 1454 ntBASIC30.57■■■□□ 2.48
RNF41Q9H4P4 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.57■■■□□ 2.48
RNF41Q9H4P4 AC135983.2-203ENST00000454486 1613 ntBASIC30.57■■■□□ 2.48
RNF41Q9H4P4 AL139393.2-201ENST00000608721 2025 ntBASIC30.56■■■□□ 2.48
RNF41Q9H4P4 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
RNF41Q9H4P4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.55■■■□□ 2.48
RNF41Q9H4P4 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.54■■■□□ 2.48
RNF41Q9H4P4 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RNF41Q9H4P4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RNF41Q9H4P4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RNF41Q9H4P4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.53■■■□□ 2.48
RNF41Q9H4P4 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
RNF41Q9H4P4 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
RNF41Q9H4P4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
RNF41Q9H4P4 MIR7108-201ENST00000614319 87 ntBASIC30.51■■■□□ 2.47
RNF41Q9H4P4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.51■■■□□ 2.47
RNF41Q9H4P4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.5■■■□□ 2.47
RNF41Q9H4P4 WHAMMP2-203ENST00000563942 1603 ntBASIC30.5■■■□□ 2.47
RNF41Q9H4P4 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
RNF41Q9H4P4 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
RNF41Q9H4P4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.47■■■□□ 2.47
RNF41Q9H4P4 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
RNF41Q9H4P4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
RNF41Q9H4P4 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.46■■■□□ 2.47
RNF41Q9H4P4 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
RNF41Q9H4P4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
RNF41Q9H4P4 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
RNF41Q9H4P4 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
RNF41Q9H4P4 DUX4L11-201ENST00000611504 1267 ntBASIC30.45■■■□□ 2.47
RNF41Q9H4P4 DUX4L12-201ENST00000614593 1267 ntBASIC30.45■■■□□ 2.47
RNF41Q9H4P4 DUX4L14-201ENST00000621227 1267 ntBASIC30.45■■■□□ 2.47
RNF41Q9H4P4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
RNF41Q9H4P4 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
RNF41Q9H4P4 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
RNF41Q9H4P4 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.44■■■□□ 2.46
RNF41Q9H4P4 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
RNF41Q9H4P4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.43■■■□□ 2.46
RNF41Q9H4P4 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms