Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AC108673.1-201ENST00000510422 1159 ntBASIC21.37■■□□□ 1.01
SSX3Q99909 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SSX3Q99909 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SSX3Q99909 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SSX3Q99909 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
SSX3Q99909 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SSX3Q99909 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SSX3Q99909 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.36■■□□□ 1.01
SSX3Q99909 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.36■■□□□ 1.01
SSX3Q99909 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
SSX3Q99909 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SSX3Q99909 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.36■■□□□ 1.01
SSX3Q99909 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SSX3Q99909 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.35■■□□□ 1.01
SSX3Q99909 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SSX3Q99909 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SSX3Q99909 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.34■■□□□ 1.01
SSX3Q99909 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.34■■□□□ 1.01
SSX3Q99909 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX3Q99909 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.33■■□□□ 1.01
SSX3Q99909 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.32■■□□□ 1
SSX3Q99909 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.32■■□□□ 1
SSX3Q99909 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.32■■□□□ 1
SSX3Q99909 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
SSX3Q99909 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.32■■□□□ 1
SSX3Q99909 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.32■■□□□ 1
SSX3Q99909 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SSX3Q99909 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SSX3Q99909 DUX4L29-201ENST00000425409 679 ntBASIC21.31■■□□□ 1
SSX3Q99909 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.31■■□□□ 1
SSX3Q99909 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SSX3Q99909 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.31■■□□□ 1
SSX3Q99909 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SSX3Q99909 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
SSX3Q99909 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SSX3Q99909 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SSX3Q99909 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SSX3Q99909 MIR6090-201ENST00000622481 60 ntBASIC21.3■■□□□ 1
SSX3Q99909 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SSX3Q99909 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.3■■□□□ 1
SSX3Q99909 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
SSX3Q99909 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SSX3Q99909 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.28■■□□□ 1
SSX3Q99909 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.28■■□□□ 1
SSX3Q99909 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.28■■□□□ 1
SSX3Q99909 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SSX3Q99909 MIR7108-201ENST00000614319 87 ntBASIC21.28■■□□□ 1
SSX3Q99909 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.28■■□□□ 1
SSX3Q99909 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.28■■□□□ 1
SSX3Q99909 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SSX3Q99909 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SSX3Q99909 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SSX3Q99909 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SSX3Q99909 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SSX3Q99909 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.27■□□□□ 0.99
SSX3Q99909 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SSX3Q99909 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.26■□□□□ 0.99
SSX3Q99909 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.26■□□□□ 0.99
SSX3Q99909 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SSX3Q99909 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SSX3Q99909 ZNRF2P2-203ENST00000454624 420 ntBASIC21.25■□□□□ 0.99
SSX3Q99909 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SSX3Q99909 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SSX3Q99909 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SSX3Q99909 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SSX3Q99909 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SSX3Q99909 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.24■□□□□ 0.99
SSX3Q99909 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SSX3Q99909 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SSX3Q99909 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SSX3Q99909 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SSX3Q99909 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SSX3Q99909 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SSX3Q99909 AC021231.2-201ENST00000594613 730 ntBASIC21.23■□□□□ 0.99
SSX3Q99909 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SSX3Q99909 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.23■□□□□ 0.99
SSX3Q99909 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SSX3Q99909 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SSX3Q99909 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SSX3Q99909 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
SSX3Q99909 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
SSX3Q99909 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.22■□□□□ 0.99
SSX3Q99909 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SSX3Q99909 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SSX3Q99909 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SSX3Q99909 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SSX3Q99909 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.2■□□□□ 0.98
SSX3Q99909 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
SSX3Q99909 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SSX3Q99909 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SSX3Q99909 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SSX3Q99909 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.19■□□□□ 0.98
SSX3Q99909 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SSX3Q99909 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SSX3Q99909 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SSX3Q99909 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.18■□□□□ 0.98
SSX3Q99909 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SSX3Q99909 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.17■□□□□ 0.98
SSX3Q99909 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SSX3Q99909 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms