Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOBP04114 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOBP04114 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOBP04114 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
APOBP04114 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOBP04114 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC16.69■□□□□ 0.26
APOBP04114 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
APOBP04114 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOBP04114 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
APOBP04114 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOBP04114 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC16.67■□□□□ 0.26
APOBP04114 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC16.67■□□□□ 0.26
APOBP04114 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC16.67■□□□□ 0.26
APOBP04114 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
APOBP04114 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOBP04114 AL035685.1-201ENST00000636663 812 ntBASIC16.66■□□□□ 0.26
APOBP04114 AC012354.3-201ENST00000623734 483 ntBASIC16.66■□□□□ 0.26
APOBP04114 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC16.66■□□□□ 0.26
APOBP04114 EI24-212ENST00000615917 1407 ntTSL 2 BASIC16.65■□□□□ 0.26
APOBP04114 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOBP04114 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC16.64■□□□□ 0.25
APOBP04114 AC004987.1-201ENST00000428627 508 ntBASIC16.64■□□□□ 0.25
APOBP04114 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC16.64■□□□□ 0.25
APOBP04114 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
APOBP04114 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
APOBP04114 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
APOBP04114 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
APOBP04114 RARRES2P1-201ENST00000474487 481 ntBASIC16.63■□□□□ 0.25
APOBP04114 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC16.63■□□□□ 0.25
APOBP04114 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
APOBP04114 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
APOBP04114 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
APOBP04114 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
APOBP04114 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
APOBP04114 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC16.62■□□□□ 0.25
APOBP04114 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
APOBP04114 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
APOBP04114 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC16.6■□□□□ 0.25
APOBP04114 U85056.1-201ENST00000616429 682 ntBASIC16.6■□□□□ 0.25
APOBP04114 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC16.6■□□□□ 0.25
APOBP04114 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
APOBP04114 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
APOBP04114 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
APOBP04114 TSPY13P-201ENST00000338964 914 ntBASIC16.59■□□□□ 0.25
APOBP04114 AL451085.2-201ENST00000605085 799 ntBASIC16.59■□□□□ 0.25
APOBP04114 GUK1-208ENST00000366728 842 ntTSL 2 BASIC16.59■□□□□ 0.25
APOBP04114 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC16.59■□□□□ 0.25
APOBP04114 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
APOBP04114 AL592295.1-201ENST00000400984 884 ntBASIC16.58■□□□□ 0.25
APOBP04114 AC060814.1-201ENST00000554326 538 ntBASIC16.58■□□□□ 0.25
APOBP04114 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
APOBP04114 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC16.58■□□□□ 0.25
APOBP04114 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC16.58■□□□□ 0.25
APOBP04114 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
APOBP04114 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC16.58■□□□□ 0.24
APOBP04114 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC16.58■□□□□ 0.24
APOBP04114 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
APOBP04114 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
APOBP04114 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
APOBP04114 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC16.57■□□□□ 0.24
APOBP04114 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
APOBP04114 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
APOBP04114 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
APOBP04114 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
APOBP04114 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC16.56■□□□□ 0.24
APOBP04114 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
APOBP04114 HYI-213ENST00000583037 1322 ntTSL 5 BASIC16.55■□□□□ 0.24
APOBP04114 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC16.55■□□□□ 0.24
APOBP04114 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
APOBP04114 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
APOBP04114 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
APOBP04114 ATP5G2P3-201ENST00000429083 425 ntBASIC16.55■□□□□ 0.24
APOBP04114 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC16.55■□□□□ 0.24
APOBP04114 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
APOBP04114 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
APOBP04114 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
APOBP04114 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC16.54■□□□□ 0.24
APOBP04114 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
APOBP04114 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
APOBP04114 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC16.53■□□□□ 0.24
APOBP04114 AC022413.1-201ENST00000624602 984 ntBASIC16.53■□□□□ 0.24
APOBP04114 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOBP04114 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
APOBP04114 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOBP04114 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC16.52■□□□□ 0.24
APOBP04114 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC16.51■□□□□ 0.23
APOBP04114 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC16.51■□□□□ 0.23
APOBP04114 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC16.51■□□□□ 0.23
APOBP04114 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
APOBP04114 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
APOBP04114 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
APOBP04114 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOBP04114 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOBP04114 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOBP04114 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC16.48■□□□□ 0.23
APOBP04114 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC16.48■□□□□ 0.23
APOBP04114 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOBP04114 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
APOBP04114 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
APOBP04114 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms