Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.72■■■□□ 2.83
ZC3H4Q9UPT8 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
ZC3H4Q9UPT8 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
ZC3H4Q9UPT8 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC32.71■■■□□ 2.83
ZC3H4Q9UPT8 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC32.7■■■□□ 2.82
ZC3H4Q9UPT8 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC32.68■■■□□ 2.82
ZC3H4Q9UPT8 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC32.68■■■□□ 2.82
ZC3H4Q9UPT8 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
ZC3H4Q9UPT8 CHML-204ENST00000638121 920 ntTSL 2 BASIC32.67■■■□□ 2.82
ZC3H4Q9UPT8 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
ZC3H4Q9UPT8 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
ZC3H4Q9UPT8 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC32.63■■■□□ 2.81
ZC3H4Q9UPT8 AC012354.3-201ENST00000623734 483 ntBASIC32.63■■■□□ 2.81
ZC3H4Q9UPT8 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
ZC3H4Q9UPT8 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
ZC3H4Q9UPT8 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC32.61■■■□□ 2.81
ZC3H4Q9UPT8 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32.61■■■□□ 2.81
ZC3H4Q9UPT8 NTF6A-201ENST00000591175 560 ntBASIC32.61■■■□□ 2.81
ZC3H4Q9UPT8 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC32.61■■■□□ 2.81
ZC3H4Q9UPT8 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
ZC3H4Q9UPT8 TPT1-202ENST00000379055 948 ntTSL 2 BASIC32.57■■■□□ 2.8
ZC3H4Q9UPT8 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
ZC3H4Q9UPT8 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC32.56■■■□□ 2.8
ZC3H4Q9UPT8 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
ZC3H4Q9UPT8 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
ZC3H4Q9UPT8 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
ZC3H4Q9UPT8 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
ZC3H4Q9UPT8 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.54■■■□□ 2.8
ZC3H4Q9UPT8 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
ZC3H4Q9UPT8 EI24-212ENST00000615917 1407 ntTSL 2 BASIC32.52■■■□□ 2.8
ZC3H4Q9UPT8 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC32.5■■■□□ 2.79
ZC3H4Q9UPT8 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
ZC3H4Q9UPT8 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
ZC3H4Q9UPT8 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
ZC3H4Q9UPT8 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
ZC3H4Q9UPT8 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC32.48■■■□□ 2.79
ZC3H4Q9UPT8 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC32.48■■■□□ 2.79
ZC3H4Q9UPT8 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC32.47■■■□□ 2.79
ZC3H4Q9UPT8 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.46■■■□□ 2.79
ZC3H4Q9UPT8 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC32.45■■■□□ 2.79
ZC3H4Q9UPT8 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC32.45■■■□□ 2.79
ZC3H4Q9UPT8 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC32.45■■■□□ 2.78
ZC3H4Q9UPT8 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC32.45■■■□□ 2.78
ZC3H4Q9UPT8 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
ZC3H4Q9UPT8 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC32.44■■■□□ 2.78
ZC3H4Q9UPT8 CEP120-209ENST00000515110 606 ntTSL 3 BASIC32.43■■■□□ 2.78
ZC3H4Q9UPT8 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
ZC3H4Q9UPT8 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
ZC3H4Q9UPT8 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC32.42■■■□□ 2.78
ZC3H4Q9UPT8 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
ZC3H4Q9UPT8 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC32.41■■■□□ 2.78
ZC3H4Q9UPT8 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC32.4■■■□□ 2.78
ZC3H4Q9UPT8 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC32.4■■■□□ 2.78
ZC3H4Q9UPT8 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC32.4■■■□□ 2.78
ZC3H4Q9UPT8 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
ZC3H4Q9UPT8 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC32.39■■■□□ 2.78
ZC3H4Q9UPT8 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC32.38■■■□□ 2.77
ZC3H4Q9UPT8 HES4-202ENST00000428771 1040 ntTSL 2 BASIC32.38■■■□□ 2.77
ZC3H4Q9UPT8 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
ZC3H4Q9UPT8 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
ZC3H4Q9UPT8 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
ZC3H4Q9UPT8 AC018358.1-201ENST00000631079 1402 ntBASIC32.37■■■□□ 2.77
ZC3H4Q9UPT8 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.37■■■□□ 2.77
ZC3H4Q9UPT8 CHST11-202ENST00000546689 756 ntTSL 2 BASIC32.36■■■□□ 2.77
ZC3H4Q9UPT8 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
ZC3H4Q9UPT8 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC32.35■■■□□ 2.77
ZC3H4Q9UPT8 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
ZC3H4Q9UPT8 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
ZC3H4Q9UPT8 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
ZC3H4Q9UPT8 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
ZC3H4Q9UPT8 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC32.32■■■□□ 2.76
ZC3H4Q9UPT8 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC32.32■■■□□ 2.76
ZC3H4Q9UPT8 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
ZC3H4Q9UPT8 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
ZC3H4Q9UPT8 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC32.29■■■□□ 2.76
ZC3H4Q9UPT8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC32.28■■■□□ 2.76
ZC3H4Q9UPT8 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
ZC3H4Q9UPT8 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC32.28■■■□□ 2.76
ZC3H4Q9UPT8 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC32.27■■■□□ 2.76
ZC3H4Q9UPT8 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
ZC3H4Q9UPT8 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC32.27■■■□□ 2.76
ZC3H4Q9UPT8 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
ZC3H4Q9UPT8 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC32.26■■■□□ 2.75
ZC3H4Q9UPT8 AC022413.1-201ENST00000624602 984 ntBASIC32.26■■■□□ 2.75
ZC3H4Q9UPT8 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
ZC3H4Q9UPT8 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
ZC3H4Q9UPT8 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC32.25■■■□□ 2.75
ZC3H4Q9UPT8 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.24■■■□□ 2.75
ZC3H4Q9UPT8 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
ZC3H4Q9UPT8 AL033527.3-201ENST00000566366 1196 ntBASIC32.23■■■□□ 2.75
ZC3H4Q9UPT8 AC008813.1-201ENST00000536597 885 ntBASIC32.22■■■□□ 2.75
ZC3H4Q9UPT8 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC32.21■■■□□ 2.75
ZC3H4Q9UPT8 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
ZC3H4Q9UPT8 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
ZC3H4Q9UPT8 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC32.19■■■□□ 2.74
ZC3H4Q9UPT8 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC32.19■■■□□ 2.74
ZC3H4Q9UPT8 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC32.19■■■□□ 2.74
ZC3H4Q9UPT8 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
ZC3H4Q9UPT8 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
ZC3H4Q9UPT8 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms