Protein–RNA interactions for Protein: Q9H094

NBPF3, Neuroblastoma breakpoint family member 3, humanhuman

Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NBPF3Q9H094 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.43■■■□□ 2.62
NBPF3Q9H094 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.43■■■□□ 2.62
NBPF3Q9H094 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.43■■■□□ 2.62
NBPF3Q9H094 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.43■■■□□ 2.62
NBPF3Q9H094 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.43■■■□□ 2.62
NBPF3Q9H094 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
NBPF3Q9H094 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
NBPF3Q9H094 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.41■■■□□ 2.62
NBPF3Q9H094 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.4■■■□□ 2.62
NBPF3Q9H094 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.4■■■□□ 2.62
NBPF3Q9H094 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.4■■■□□ 2.62
NBPF3Q9H094 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
NBPF3Q9H094 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
NBPF3Q9H094 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.39■■■□□ 2.62
NBPF3Q9H094 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
NBPF3Q9H094 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.61
NBPF3Q9H094 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
NBPF3Q9H094 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.37■■■□□ 2.61
NBPF3Q9H094 AC010864.1-201ENST00000609407 1511 ntBASIC31.36■■■□□ 2.61
NBPF3Q9H094 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NBPF3Q9H094 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.35■■■□□ 2.61
NBPF3Q9H094 ST7-AS1-201ENST00000456775 1889 ntBASIC31.35■■■□□ 2.61
NBPF3Q9H094 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
NBPF3Q9H094 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NBPF3Q9H094 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.34■■■□□ 2.61
NBPF3Q9H094 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.34■■■□□ 2.61
NBPF3Q9H094 ZNRF2P2-203ENST00000454624 420 ntBASIC31.34■■■□□ 2.61
NBPF3Q9H094 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.34■■■□□ 2.61
NBPF3Q9H094 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.34■■■□□ 2.61
NBPF3Q9H094 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
NBPF3Q9H094 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NBPF3Q9H094 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NBPF3Q9H094 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.61
NBPF3Q9H094 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NBPF3Q9H094 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
NBPF3Q9H094 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
NBPF3Q9H094 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NBPF3Q9H094 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.3■■■□□ 2.6
NBPF3Q9H094 ABCB10P1-201ENST00000614297 2181 ntBASIC31.29■■■□□ 2.6
NBPF3Q9H094 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NBPF3Q9H094 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
NBPF3Q9H094 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NBPF3Q9H094 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NBPF3Q9H094 MIR6090-201ENST00000622481 60 ntBASIC31.27■■■□□ 2.6
NBPF3Q9H094 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.26■■■□□ 2.6
NBPF3Q9H094 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.26■■■□□ 2.59
NBPF3Q9H094 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
NBPF3Q9H094 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.26■■■□□ 2.59
NBPF3Q9H094 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.26■■■□□ 2.59
NBPF3Q9H094 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
NBPF3Q9H094 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.25■■■□□ 2.59
NBPF3Q9H094 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.25■■■□□ 2.59
NBPF3Q9H094 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.23■■■□□ 2.59
NBPF3Q9H094 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NBPF3Q9H094 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
NBPF3Q9H094 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.23■■■□□ 2.59
NBPF3Q9H094 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NBPF3Q9H094 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC31.21■■■□□ 2.59
NBPF3Q9H094 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NBPF3Q9H094 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.21■■■□□ 2.59
NBPF3Q9H094 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
NBPF3Q9H094 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NBPF3Q9H094 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
NBPF3Q9H094 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NBPF3Q9H094 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
NBPF3Q9H094 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
NBPF3Q9H094 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.18■■■□□ 2.58
NBPF3Q9H094 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
NBPF3Q9H094 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
NBPF3Q9H094 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.17■■■□□ 2.58
NBPF3Q9H094 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NBPF3Q9H094 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.16■■■□□ 2.58
NBPF3Q9H094 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
NBPF3Q9H094 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NBPF3Q9H094 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
NBPF3Q9H094 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
NBPF3Q9H094 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NBPF3Q9H094 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
NBPF3Q9H094 AC108673.1-201ENST00000510422 1159 ntBASIC31.12■■■□□ 2.57
NBPF3Q9H094 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
NBPF3Q9H094 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NBPF3Q9H094 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.1■■■□□ 2.57
NBPF3Q9H094 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
NBPF3Q9H094 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.1■■■□□ 2.57
NBPF3Q9H094 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.57
NBPF3Q9H094 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.57
NBPF3Q9H094 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
NBPF3Q9H094 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NBPF3Q9H094 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NBPF3Q9H094 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.08■■■□□ 2.57
NBPF3Q9H094 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
NBPF3Q9H094 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NBPF3Q9H094 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
NBPF3Q9H094 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.07■■■□□ 2.56
NBPF3Q9H094 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.07■■■□□ 2.56
NBPF3Q9H094 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
NBPF3Q9H094 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
NBPF3Q9H094 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
NBPF3Q9H094 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
NBPF3Q9H094 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms