Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 ABHD17AP5-201ENST00000580133 923 ntBASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CSPG4Q6UVK1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CSPG4Q6UVK1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CSPG4Q6UVK1 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CSPG4Q6UVK1 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CSPG4Q6UVK1 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
CSPG4Q6UVK1 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC22.03■■□□□ 1.12
CSPG4Q6UVK1 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CSPG4Q6UVK1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CSPG4Q6UVK1 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC22■■□□□ 1.11
CSPG4Q6UVK1 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CSPG4Q6UVK1 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CSPG4Q6UVK1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CSPG4Q6UVK1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CSPG4Q6UVK1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CSPG4Q6UVK1 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 RNF126P1-201ENST00000567452 1320 ntBASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CSPG4Q6UVK1 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.97■■□□□ 1.11
CSPG4Q6UVK1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.97■■□□□ 1.11
CSPG4Q6UVK1 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
CSPG4Q6UVK1 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSPG4Q6UVK1 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.94■■□□□ 1.1
CSPG4Q6UVK1 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.94■■□□□ 1.1
CSPG4Q6UVK1 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSPG4Q6UVK1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CSPG4Q6UVK1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CSPG4Q6UVK1 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSPG4Q6UVK1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSPG4Q6UVK1 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CSPG4Q6UVK1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.92■■□□□ 1.1
CSPG4Q6UVK1 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CSPG4Q6UVK1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CSPG4Q6UVK1 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC21.9■■□□□ 1.1
CSPG4Q6UVK1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CSPG4Q6UVK1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.89■■□□□ 1.1
CSPG4Q6UVK1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.89■■□□□ 1.1
CSPG4Q6UVK1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
CSPG4Q6UVK1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
CSPG4Q6UVK1 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CSPG4Q6UVK1 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CSPG4Q6UVK1 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.87■■□□□ 1.09
CSPG4Q6UVK1 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.86■■□□□ 1.09
CSPG4Q6UVK1 GPX1-201ENST00000419349 1106 ntBASIC21.86■■□□□ 1.09
CSPG4Q6UVK1 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CSPG4Q6UVK1 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CSPG4Q6UVK1 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.85■■□□□ 1.09
CSPG4Q6UVK1 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CSPG4Q6UVK1 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CSPG4Q6UVK1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.84■■□□□ 1.09
CSPG4Q6UVK1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CSPG4Q6UVK1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.83■■□□□ 1.08
CSPG4Q6UVK1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.82■■□□□ 1.08
CSPG4Q6UVK1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
CSPG4Q6UVK1 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.82■■□□□ 1.08
CSPG4Q6UVK1 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CSPG4Q6UVK1 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CSPG4Q6UVK1 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CSPG4Q6UVK1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 NTF6A-201ENST00000591175 560 ntBASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
CSPG4Q6UVK1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.79■■□□□ 1.08
CSPG4Q6UVK1 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.78■■□□□ 1.08
CSPG4Q6UVK1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CSPG4Q6UVK1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CSPG4Q6UVK1 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CSPG4Q6UVK1 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CSPG4Q6UVK1 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CSPG4Q6UVK1 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
CSPG4Q6UVK1 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.77■■□□□ 1.07
CSPG4Q6UVK1 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CSPG4Q6UVK1 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.77■■□□□ 1.07
CSPG4Q6UVK1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CSPG4Q6UVK1 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.76■■□□□ 1.07
CSPG4Q6UVK1 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CSPG4Q6UVK1 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.75■■□□□ 1.07
CSPG4Q6UVK1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.75■■□□□ 1.07
CSPG4Q6UVK1 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CSPG4Q6UVK1 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms